miRNA display CGI


Results 81 - 100 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 67937 0.73 0.507693
Target:  5'- aGACGCGgcCGcGCGcccacCACGCGCCggggGCCa -3'
miRNA:   3'- -CUGCGCauGU-CGUu----GUGCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 135909 0.73 0.497974
Target:  5'- -cCGCGaccccgGCGGUcguGCGCGCGCuCUGCCg -3'
miRNA:   3'- cuGCGCa-----UGUCGu--UGUGCGCG-GACGG- -5'
29543 3' -56.1 NC_006151.1 + 130587 0.73 0.517491
Target:  5'- gGAgGUgGUGCAGCGGCACcaGCGCCUcCCa -3'
miRNA:   3'- -CUgCG-CAUGUCGUUGUG--CGCGGAcGG- -5'
29543 3' -56.1 NC_006151.1 + 125053 0.73 0.497974
Target:  5'- cGGCGCuacaACAGCAcGCACGUGCUgGCCg -3'
miRNA:   3'- -CUGCGca--UGUCGU-UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 64602 0.73 0.497974
Target:  5'- aGGCG-GUACgccAGCGGCGcCGCGCCgccgGCCg -3'
miRNA:   3'- -CUGCgCAUG---UCGUUGU-GCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 10465 0.73 0.501852
Target:  5'- gGACGCGgcgGCGGUgaaGgaggagagccgcccgGCGCGCGCCcGCCg -3'
miRNA:   3'- -CUGCGCa--UGUCG---U---------------UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 101289 0.73 0.507693
Target:  5'- gGGCGCGgGCGGCGcCGCGCuGCaCUGCg -3'
miRNA:   3'- -CUGCGCaUGUCGUuGUGCG-CG-GACGg -5'
29543 3' -56.1 NC_006151.1 + 137861 0.73 0.507693
Target:  5'- gGGCGUGUACGcGCAcGgGCGCaGCCUGCg -3'
miRNA:   3'- -CUGCGCAUGU-CGU-UgUGCG-CGGACGg -5'
29543 3' -56.1 NC_006151.1 + 100805 0.73 0.527365
Target:  5'- gGugGCGggcgACGGCGAgGCGgGCCccgacgccgUGCCg -3'
miRNA:   3'- -CugCGCa---UGUCGUUgUGCgCGG---------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 130548 0.73 0.527365
Target:  5'- cGCGCG-AgGGCGGCGCGCuGCC-GCCc -3'
miRNA:   3'- cUGCGCaUgUCGUUGUGCG-CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 112810 0.73 0.527365
Target:  5'- cGCGCGUcGCuGCA--GCGCGCCUucGCCa -3'
miRNA:   3'- cUGCGCA-UGuCGUugUGCGCGGA--CGG- -5'
29543 3' -56.1 NC_006151.1 + 56456 0.73 0.534317
Target:  5'- cGCGCGUGCuGCccCACuaccccaucgcccaGCGCCUGCUg -3'
miRNA:   3'- cUGCGCAUGuCGuuGUG--------------CGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 110183 0.73 0.527365
Target:  5'- -cCGCGUGCcGCcugauAGCGCGcCGCCUGCg -3'
miRNA:   3'- cuGCGCAUGuCG-----UUGUGC-GCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 124063 0.73 0.527365
Target:  5'- gGACGCGcggACGGCcgUGCGCGCg-GCCg -3'
miRNA:   3'- -CUGCGCa--UGUCGuuGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 53673 0.72 0.566481
Target:  5'- cACGCGUaGCuGUAGCGCccgagcuGCGCCUGCa -3'
miRNA:   3'- cUGCGCA-UGuCGUUGUG-------CGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 90694 0.72 0.557378
Target:  5'- cGGCGgGgGCGGCGG-ACGCGCCcGCCc -3'
miRNA:   3'- -CUGCgCaUGUCGUUgUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 122396 0.72 0.567495
Target:  5'- gGGCGCGcGCuGGCGGCGCuCGCC-GCCg -3'
miRNA:   3'- -CUGCGCaUG-UCGUUGUGcGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 98109 0.72 0.547314
Target:  5'- --gGCGUAUaaGGCGcGCGCGCGCCgaGCCc -3'
miRNA:   3'- cugCGCAUG--UCGU-UGUGCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 75529 0.72 0.550327
Target:  5'- aGCGgGUACGGCAccugcguggccugguACACGCGCUUcucgaggGCCu -3'
miRNA:   3'- cUGCgCAUGUCGU---------------UGUGCGCGGA-------CGG- -5'
29543 3' -56.1 NC_006151.1 + 105675 0.72 0.557378
Target:  5'- uACGCGgccUACGGCGGCGCGgGgCCgacGCCg -3'
miRNA:   3'- cUGCGC---AUGUCGUUGUGCgC-GGa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.