Results 101 - 120 of 456 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29543 | 3' | -56.1 | NC_006151.1 | + | 90694 | 0.72 | 0.557378 |
Target: 5'- cGGCGgGgGCGGCGG-ACGCGCCcGCCc -3' miRNA: 3'- -CUGCgCaUGUCGUUgUGCGCGGaCGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 53673 | 0.72 | 0.566481 |
Target: 5'- cACGCGUaGCuGUAGCGCccgagcuGCGCCUGCa -3' miRNA: 3'- cUGCGCA-UGuCGUUGUG-------CGCGGACGg -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 117273 | 0.72 | 0.577658 |
Target: 5'- cGCGCGgccgccgccgACAGC-GCGCGCGCgaGCUg -3' miRNA: 3'- cUGCGCa---------UGUCGuUGUGCGCGgaCGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 96984 | 0.72 | 0.596046 |
Target: 5'- gGACGCGgcacggaggguCAGCGgggggacacGCGCGCGUgUGCCc -3' miRNA: 3'- -CUGCGCau---------GUCGU---------UGUGCGCGgACGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 76847 | 0.72 | 0.567495 |
Target: 5'- gGGCGaCGUACAGgaaggcCAGC-CGCGCCgccGCCa -3' miRNA: 3'- -CUGC-GCAUGUC------GUUGuGCGCGGa--CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 84426 | 0.72 | 0.598095 |
Target: 5'- aGGCgGCGcGCGGCGGCGCGCgGCCcaUGUCc -3' miRNA: 3'- -CUG-CGCaUGUCGUUGUGCG-CGG--ACGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 60538 | 0.72 | 0.577658 |
Target: 5'- aGACGuUGUcccccGCGGCGagGCGCGCGCCcaggagGCCg -3' miRNA: 3'- -CUGC-GCA-----UGUCGU--UGUGCGCGGa-----CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 78046 | 0.72 | 0.59707 |
Target: 5'- cGACGCGgcGCaucugGGCGACGCGCggcgggaGCCUGUCc -3' miRNA: 3'- -CUGCGCa-UG-----UCGUUGUGCG-------CGGACGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 86578 | 0.72 | 0.557378 |
Target: 5'- cGGCGCGgGCGcGCuccgagcugcuGGCGCGCGCC-GCCg -3' miRNA: 3'- -CUGCGCaUGU-CG-----------UUGUGCGCGGaCGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 60854 | 0.72 | 0.591951 |
Target: 5'- cGugGCGUccaugacgaggacccGCGGCAGC-CGCGCagcaGCCg -3' miRNA: 3'- -CugCGCA---------------UGUCGUUGuGCGCGga--CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 83605 | 0.72 | 0.598095 |
Target: 5'- cGCGUGUGCAGCAGCAgguacgGCGUCgcgaaggcgGCCu -3' miRNA: 3'- cUGCGCAUGUCGUUGUg-----CGCGGa--------CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 27086 | 0.72 | 0.598095 |
Target: 5'- gGGCGCG-GC-GCAGgGCGCGCgUGUCg -3' miRNA: 3'- -CUGCGCaUGuCGUUgUGCGCGgACGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 137912 | 0.72 | 0.577658 |
Target: 5'- cGACgGCG-GCGGCugccACGgGCGCCUGCUc -3' miRNA: 3'- -CUG-CGCaUGUCGu---UGUgCGCGGACGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 72370 | 0.72 | 0.577658 |
Target: 5'- aGCGCGaccucgcGCAGCGuCGCGUGCC-GCCg -3' miRNA: 3'- cUGCGCa------UGUCGUuGUGCGCGGaCGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 85295 | 0.72 | 0.577658 |
Target: 5'- cGCGCGUGCcgcgcgAGCAGCuccacgggcgcuACGCGCUggaggGCCa -3' miRNA: 3'- cUGCGCAUG------UCGUUG------------UGCGCGGa----CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 118783 | 0.72 | 0.567495 |
Target: 5'- gGACGCGgugGCGcGCGGCGCGgCGCaccugGCCu -3' miRNA: 3'- -CUGCGCa--UGU-CGUUGUGC-GCGga---CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 122396 | 0.72 | 0.567495 |
Target: 5'- gGGCGCGcGCuGGCGGCGCuCGCC-GCCg -3' miRNA: 3'- -CUGCGCaUG-UCGUUGUGcGCGGaCGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 105675 | 0.72 | 0.557378 |
Target: 5'- uACGCGgccUACGGCGGCGCGgGgCCgacGCCg -3' miRNA: 3'- cUGCGC---AUGUCGUUGUGCgC-GGa--CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 139646 | 0.72 | 0.567495 |
Target: 5'- cGGCGCGggggucGCGGCGG-GCGCGCC-GCCc -3' miRNA: 3'- -CUGCGCa-----UGUCGUUgUGCGCGGaCGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 63703 | 0.72 | 0.587861 |
Target: 5'- uGCGCGUucGCGGCGACgugGCGCCcGUCg -3' miRNA: 3'- cUGCGCA--UGUCGUUGug-CGCGGaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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