miRNA display CGI


Results 41 - 60 of 456 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 130465 0.75 0.414755
Target:  5'- --gGCGUGguGCAGgGCGaugGCCUGCCg -3'
miRNA:   3'- cugCGCAUguCGUUgUGCg--CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 105532 0.75 0.420923
Target:  5'- cGGCGCGcaucgggcccgagcUGCGGCAcgacgcccuGCGCGCGCUggcgGCCg -3'
miRNA:   3'- -CUGCGC--------------AUGUCGU---------UGUGCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 85802 0.75 0.422695
Target:  5'- cGCGCGUGCAGCGcCACcagcucaaccgguGCGCCUGgUg -3'
miRNA:   3'- cUGCGCAUGUCGUuGUG-------------CGCGGACgG- -5'
29543 3' -56.1 NC_006151.1 + 58225 0.75 0.423583
Target:  5'- cGCGCGggACgAGC-ACGCGCGCC-GCCa -3'
miRNA:   3'- cUGCGCa-UG-UCGuUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 104036 0.75 0.423583
Target:  5'- aGCGCGcGCAGCGccagcucuggGCGCGCGCg-GCCg -3'
miRNA:   3'- cUGCGCaUGUCGU----------UGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 91297 0.75 0.432522
Target:  5'- -cCGCGU-CAGCAGC-CGCGCCgggaaggcGCCg -3'
miRNA:   3'- cuGCGCAuGUCGUUGuGCGCGGa-------CGG- -5'
29543 3' -56.1 NC_006151.1 + 15157 0.74 0.44157
Target:  5'- cGACGUG-ACgGGCGACACGCGCgccCUGCg -3'
miRNA:   3'- -CUGCGCaUG-UCGUUGUGCGCG---GACGg -5'
29543 3' -56.1 NC_006151.1 + 68979 0.74 0.44157
Target:  5'- gGACGcCGgcCAGCAGCGCGCGCaCgcagGCg -3'
miRNA:   3'- -CUGC-GCauGUCGUUGUGCGCG-Ga---CGg -5'
29543 3' -56.1 NC_006151.1 + 105715 0.74 0.44157
Target:  5'- cGCGCGccucgACGGCGccguGCGCGCGCCUGa- -3'
miRNA:   3'- cUGCGCa----UGUCGU----UGUGCGCGGACgg -5'
29543 3' -56.1 NC_006151.1 + 54946 0.74 0.44157
Target:  5'- cACGCGcUGCgcgAGC-ACGCGCGCCUcuGCCa -3'
miRNA:   3'- cUGCGC-AUG---UCGuUGUGCGCGGA--CGG- -5'
29543 3' -56.1 NC_006151.1 + 130269 0.74 0.450724
Target:  5'- cGGCGC--GCGGCcccgaggccgcgGGCGCGCGCCgGCCg -3'
miRNA:   3'- -CUGCGcaUGUCG------------UUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 102353 0.74 0.459051
Target:  5'- gGACGUGgcCGGCGACGacgcgucCGCGCCcgugGCCa -3'
miRNA:   3'- -CUGCGCauGUCGUUGU-------GCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 20897 0.74 0.459981
Target:  5'- aGGCGCa-GCAGCucCACGCGCCcGCUg -3'
miRNA:   3'- -CUGCGcaUGUCGuuGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 38386 0.74 0.469339
Target:  5'- cGGCGCcgGCGGCGGCGgGCGCCcccuccgGCCu -3'
miRNA:   3'- -CUGCGcaUGUCGUUGUgCGCGGa------CGG- -5'
29543 3' -56.1 NC_006151.1 + 104810 0.74 0.469339
Target:  5'- -cCGCGaccugGCGGCGGCGCGCgacgGCCUcGCCg -3'
miRNA:   3'- cuGCGCa----UGUCGUUGUGCG----CGGA-CGG- -5'
29543 3' -56.1 NC_006151.1 + 95283 0.74 0.469339
Target:  5'- uGACGaagacgGCGGCGACGCGCGCg-GCCc -3'
miRNA:   3'- -CUGCgca---UGUCGUUGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 47761 0.74 0.478793
Target:  5'- uGCGCGaUGCGGCGAU-CGCGCCgaGCUg -3'
miRNA:   3'- cUGCGC-AUGUCGUUGuGCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 17930 0.74 0.478793
Target:  5'- cGACGCccaucagGCAGCGGCggcgucuccgGCGCccGCCUGCCg -3'
miRNA:   3'- -CUGCGca-----UGUCGUUG----------UGCG--CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 104849 0.74 0.478793
Target:  5'- gGAgGCGgaccaggccGCGGCGACggagcgcgccACGCGCCUGCUg -3'
miRNA:   3'- -CUgCGCa--------UGUCGUUG----------UGCGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 99055 0.73 0.485466
Target:  5'- gGACGCGUACGuGCGcgagcugcgcccggGCACcguggcgcgGCGCCUGCg -3'
miRNA:   3'- -CUGCGCAUGU-CGU--------------UGUG---------CGCGGACGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.