miRNA display CGI


Results 81 - 100 of 456 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 137135 0.73 0.527365
Target:  5'- cGGCGCG-GC-GCGACGCgGCGCCggagaugGCCg -3'
miRNA:   3'- -CUGCGCaUGuCGUUGUG-CGCGGa------CGG- -5'
29543 3' -56.1 NC_006151.1 + 112810 0.73 0.527365
Target:  5'- cGCGCGUcGCuGCA--GCGCGCCUucGCCa -3'
miRNA:   3'- cUGCGCA-UGuCGUugUGCGCGGA--CGG- -5'
29543 3' -56.1 NC_006151.1 + 130548 0.73 0.527365
Target:  5'- cGCGCG-AgGGCGGCGCGCuGCC-GCCc -3'
miRNA:   3'- cUGCGCaUgUCGUUGUGCG-CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 124063 0.73 0.527365
Target:  5'- gGACGCGcggACGGCcgUGCGCGCg-GCCg -3'
miRNA:   3'- -CUGCGCa--UGUCGuuGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 69287 0.73 0.527365
Target:  5'- cGGCGCGccacCAGgGACACGgGCC-GCCg -3'
miRNA:   3'- -CUGCGCau--GUCgUUGUGCgCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 110183 0.73 0.527365
Target:  5'- -cCGCGUGCcGCcugauAGCGCGcCGCCUGCg -3'
miRNA:   3'- cuGCGCAUGuCG-----UUGUGC-GCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 105285 0.73 0.527365
Target:  5'- gGGCGCGcGC-GCGGC-CGCGCCggcGCCu -3'
miRNA:   3'- -CUGCGCaUGuCGUUGuGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 100805 0.73 0.527365
Target:  5'- gGugGCGggcgACGGCGAgGCGgGCCccgacgccgUGCCg -3'
miRNA:   3'- -CugCGCa---UGUCGUUgUGCgCGG---------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 56363 0.73 0.527365
Target:  5'- cGGCGCGga-AGCuACG-GCGCCUGCUg -3'
miRNA:   3'- -CUGCGCaugUCGuUGUgCGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 56456 0.73 0.534317
Target:  5'- cGCGCGUGCuGCccCACuaccccaucgcccaGCGCCUGCUg -3'
miRNA:   3'- cUGCGCAUGuCGuuGUG--------------CGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 72055 0.73 0.537307
Target:  5'- --aGCGUcuCGGCGGCGCGCGCCaccacccgcGCCg -3'
miRNA:   3'- cugCGCAu-GUCGUUGUGCGCGGa--------CGG- -5'
29543 3' -56.1 NC_006151.1 + 128258 0.73 0.537307
Target:  5'- gGugGUGgaaGCGGCAcuGCGCGCGCagcGCCg -3'
miRNA:   3'- -CugCGCa--UGUCGU--UGUGCGCGga-CGG- -5'
29543 3' -56.1 NC_006151.1 + 137004 0.73 0.537307
Target:  5'- cGCGCGcACGGCGcuGgGCGCccugcucgGCCUGCCg -3'
miRNA:   3'- cUGCGCaUGUCGU--UgUGCG--------CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 92678 0.73 0.537307
Target:  5'- --gGCGgcCGGgGACGCGCGCUcGCCg -3'
miRNA:   3'- cugCGCauGUCgUUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 98109 0.72 0.547314
Target:  5'- --gGCGUAUaaGGCGcGCGCGCGCCgaGCCc -3'
miRNA:   3'- cugCGCAUG--UCGU-UGUGCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 75529 0.72 0.550327
Target:  5'- aGCGgGUACGGCAccugcguggccugguACACGCGCUUcucgaggGCCu -3'
miRNA:   3'- cUGCgCAUGUCGU---------------UGUGCGCGGA-------CGG- -5'
29543 3' -56.1 NC_006151.1 + 90694 0.72 0.557378
Target:  5'- cGGCGgGgGCGGCGG-ACGCGCCcGCCc -3'
miRNA:   3'- -CUGCgCaUGUCGUUgUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 86578 0.72 0.557378
Target:  5'- cGGCGCGgGCGcGCuccgagcugcuGGCGCGCGCC-GCCg -3'
miRNA:   3'- -CUGCGCaUGU-CG-----------UUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 105675 0.72 0.557378
Target:  5'- uACGCGgccUACGGCGGCGCGgGgCCgacGCCg -3'
miRNA:   3'- cUGCGC---AUGUCGUUGUGCgC-GGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 53673 0.72 0.566481
Target:  5'- cACGCGUaGCuGUAGCGCccgagcuGCGCCUGCa -3'
miRNA:   3'- cUGCGCA-UGuCGUUGUG-------CGCGGACGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.