miRNA display CGI


Results 101 - 120 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 76847 0.72 0.567495
Target:  5'- gGGCGaCGUACAGgaaggcCAGC-CGCGCCgccGCCa -3'
miRNA:   3'- -CUGC-GCAUGUC------GUUGuGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 139646 0.72 0.567495
Target:  5'- cGGCGCGggggucGCGGCGG-GCGCGCC-GCCc -3'
miRNA:   3'- -CUGCGCa-----UGUCGUUgUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 85634 0.72 0.567495
Target:  5'- cGCGCGgcgcCAGCGGgGaCGCGCCcGCCu -3'
miRNA:   3'- cUGCGCau--GUCGUUgU-GCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 122396 0.72 0.567495
Target:  5'- gGGCGCGcGCuGGCGGCGCuCGCC-GCCg -3'
miRNA:   3'- -CUGCGCaUG-UCGUUGUGcGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 118783 0.72 0.567495
Target:  5'- gGACGCGgugGCGcGCGGCGCGgCGCaccugGCCu -3'
miRNA:   3'- -CUGCGCa--UGU-CGUUGUGC-GCGga---CGG- -5'
29543 3' -56.1 NC_006151.1 + 117273 0.72 0.577658
Target:  5'- cGCGCGgccgccgccgACAGC-GCGCGCGCgaGCUg -3'
miRNA:   3'- cUGCGCa---------UGUCGuUGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 137912 0.72 0.577658
Target:  5'- cGACgGCG-GCGGCugccACGgGCGCCUGCUc -3'
miRNA:   3'- -CUG-CGCaUGUCGu---UGUgCGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 85295 0.72 0.577658
Target:  5'- cGCGCGUGCcgcgcgAGCAGCuccacgggcgcuACGCGCUggaggGCCa -3'
miRNA:   3'- cUGCGCAUG------UCGUUG------------UGCGCGGa----CGG- -5'
29543 3' -56.1 NC_006151.1 + 72370 0.72 0.577658
Target:  5'- aGCGCGaccucgcGCAGCGuCGCGUGCC-GCCg -3'
miRNA:   3'- cUGCGCa------UGUCGUuGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 60538 0.72 0.577658
Target:  5'- aGACGuUGUcccccGCGGCGagGCGCGCGCCcaggagGCCg -3'
miRNA:   3'- -CUGC-GCA-----UGUCGU--UGUGCGCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 75141 0.72 0.587861
Target:  5'- cGGCGCGgccCAGCGcgggcGCACGgGCaucaUGCCg -3'
miRNA:   3'- -CUGCGCau-GUCGU-----UGUGCgCGg---ACGG- -5'
29543 3' -56.1 NC_006151.1 + 121996 0.72 0.587861
Target:  5'- cGGCGCGUGCcGCuuccACGCGCGCgUcGCg -3'
miRNA:   3'- -CUGCGCAUGuCGu---UGUGCGCGgA-CGg -5'
29543 3' -56.1 NC_006151.1 + 63703 0.72 0.587861
Target:  5'- uGCGCGUucGCGGCGACgugGCGCCcGUCg -3'
miRNA:   3'- cUGCGCA--UGUCGUUGug-CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 60854 0.72 0.591951
Target:  5'- cGugGCGUccaugacgaggacccGCGGCAGC-CGCGCagcaGCCg -3'
miRNA:   3'- -CugCGCA---------------UGUCGUUGuGCGCGga--CGG- -5'
29543 3' -56.1 NC_006151.1 + 96984 0.72 0.596046
Target:  5'- gGACGCGgcacggaggguCAGCGgggggacacGCGCGCGUgUGCCc -3'
miRNA:   3'- -CUGCGCau---------GUCGU---------UGUGCGCGgACGG- -5'
29543 3' -56.1 NC_006151.1 + 78046 0.72 0.59707
Target:  5'- cGACGCGgcGCaucugGGCGACGCGCggcgggaGCCUGUCc -3'
miRNA:   3'- -CUGCGCa-UG-----UCGUUGUGCG-------CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 119297 0.72 0.598095
Target:  5'- gGGCGCGUGCuGCugcACACG-GCCUcgcaGCCc -3'
miRNA:   3'- -CUGCGCAUGuCGu--UGUGCgCGGA----CGG- -5'
29543 3' -56.1 NC_006151.1 + 83605 0.72 0.598095
Target:  5'- cGCGUGUGCAGCAGCAgguacgGCGUCgcgaaggcgGCCu -3'
miRNA:   3'- cUGCGCAUGUCGUUGUg-----CGCGGa--------CGG- -5'
29543 3' -56.1 NC_006151.1 + 84426 0.72 0.598095
Target:  5'- aGGCgGCGcGCGGCGGCGCGCgGCCcaUGUCc -3'
miRNA:   3'- -CUG-CGCaUGUCGUUGUGCG-CGG--ACGG- -5'
29543 3' -56.1 NC_006151.1 + 27086 0.72 0.598095
Target:  5'- gGGCGCG-GC-GCAGgGCGCGCgUGUCg -3'
miRNA:   3'- -CUGCGCaUGuCGUUgUGCGCGgACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.