miRNA display CGI


Results 121 - 140 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 112949 0.72 0.602196
Target:  5'- cGACGCGcGCgauguuuuucaccguGGCGgacgcGCGCGCGCC-GCCg -3'
miRNA:   3'- -CUGCGCaUG---------------UCGU-----UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 130087 0.71 0.608355
Target:  5'- gGGCGCGaGCAGCu-CGCGCuCCUcgGCCg -3'
miRNA:   3'- -CUGCGCaUGUCGuuGUGCGcGGA--CGG- -5'
29543 3' -56.1 NC_006151.1 + 78932 0.71 0.608355
Target:  5'- -cCGCG-ACAcGCAcacacGCGCGCGCCcGCCc -3'
miRNA:   3'- cuGCGCaUGU-CGU-----UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 128011 0.71 0.608355
Target:  5'- -uCGCGgggcgGCGGCGACG-GCGUCUGCg -3'
miRNA:   3'- cuGCGCa----UGUCGUUGUgCGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 78715 0.71 0.608355
Target:  5'- -cCGCG-ACGGCGcccgugggGCGCGCGCUgcgGCCc -3'
miRNA:   3'- cuGCGCaUGUCGU--------UGUGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 60184 0.71 0.608355
Target:  5'- cGACGUGguuCAGCAGCACGgGCgUGa- -3'
miRNA:   3'- -CUGCGCau-GUCGUUGUGCgCGgACgg -5'
29543 3' -56.1 NC_006151.1 + 99582 0.71 0.608355
Target:  5'- uGCGCGaggugGCGGCGGCcgaGCGCCgcGCCg -3'
miRNA:   3'- cUGCGCa----UGUCGUUGug-CGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 134623 0.71 0.608355
Target:  5'- aGCGCGUGgccCAGCugguGCugACGCGCgaGCCg -3'
miRNA:   3'- cUGCGCAU---GUCGu---UG--UGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 60129 0.71 0.612464
Target:  5'- uGCGCGcACAcgagguucgucaccuGCGACagGCGCGCCgGCCa -3'
miRNA:   3'- cUGCGCaUGU---------------CGUUG--UGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 54778 0.71 0.612464
Target:  5'- cGAcCGCGUGCAGCuguacuacgagccccGGCACcgGCGCgUGCUg -3'
miRNA:   3'- -CU-GCGCAUGUCG---------------UUGUG--CGCGgACGG- -5'
29543 3' -56.1 NC_006151.1 + 101166 0.71 0.616576
Target:  5'- cGGCGUGgaggccgcccugACGGCcgacgccgugGACGCGUGCCUGCg -3'
miRNA:   3'- -CUGCGCa-----------UGUCG----------UUGUGCGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 131848 0.71 0.618633
Target:  5'- --aGCGggGCGGCcgaGACGCGCGCCgGCg -3'
miRNA:   3'- cugCGCa-UGUCG---UUGUGCGCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 84583 0.71 0.627892
Target:  5'- cGACGCGcGCcucgcgcuGGCGcacgcgaACGCGCGCC-GCCg -3'
miRNA:   3'- -CUGCGCaUG--------UCGU-------UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 64305 0.71 0.628921
Target:  5'- --gGCGUGCcGCAGCGCGCcguGCUgGCCu -3'
miRNA:   3'- cugCGCAUGuCGUUGUGCG---CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 83048 0.71 0.628921
Target:  5'- aGACGCGcagcgGCAGCAGCuuggccacgaGCGCGUCcaucGCCc -3'
miRNA:   3'- -CUGCGCa----UGUCGUUG----------UGCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 42994 0.71 0.628921
Target:  5'- aGAUGCGggggAgGGCGGCGgGCGCUUGgCa -3'
miRNA:   3'- -CUGCGCa---UgUCGUUGUgCGCGGACgG- -5'
29543 3' -56.1 NC_006151.1 + 109906 0.71 0.628921
Target:  5'- -cCGCGgcgGCAGCAGCAgagaccucCGcCGCCgGCCu -3'
miRNA:   3'- cuGCGCa--UGUCGUUGU--------GC-GCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 4085 0.71 0.636125
Target:  5'- cGGCGCcacgGUGCgGGCGACGagggcgacagagucCGCgGCCUGCCg -3'
miRNA:   3'- -CUGCG----CAUG-UCGUUGU--------------GCG-CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 17402 0.71 0.639212
Target:  5'- gGGCGCGUggcgcGCGGCAGCAgGgccaGCgaGCCg -3'
miRNA:   3'- -CUGCGCA-----UGUCGUUGUgCg---CGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 103333 0.71 0.639212
Target:  5'- cACGCugGUGCAggcggcGCAGCAgCGCGCC-GCCg -3'
miRNA:   3'- cUGCG--CAUGU------CGUUGU-GCGCGGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.