miRNA display CGI


Results 141 - 160 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 139269 0.71 0.639212
Target:  5'- cGCGCGcuccgACGGCGG-ACGCGCC-GCCc -3'
miRNA:   3'- cUGCGCa----UGUCGUUgUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 103333 0.71 0.639212
Target:  5'- cACGCugGUGCAggcggcGCAGCAgCGCGCC-GCCg -3'
miRNA:   3'- cUGCG--CAUGU------CGUUGU-GCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 17402 0.71 0.639212
Target:  5'- gGGCGCGUggcgcGCGGCAGCAgGgccaGCgaGCCg -3'
miRNA:   3'- -CUGCGCA-----UGUCGUUGUgCg---CGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 88199 0.71 0.639212
Target:  5'- cGGCGUGgucggACcaGGCGAgGCGCGCCU-CCg -3'
miRNA:   3'- -CUGCGCa----UG--UCGUUgUGCGCGGAcGG- -5'
29543 3' -56.1 NC_006151.1 + 135307 0.71 0.649497
Target:  5'- cGGCGCcgaccgagagGUACAGguGCAUgaGCGCC-GCCa -3'
miRNA:   3'- -CUGCG----------CAUGUCguUGUG--CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 75602 0.71 0.649497
Target:  5'- cGACGaCGagguCGGCGcgcACGCGCGCCgaGCCc -3'
miRNA:   3'- -CUGC-GCau--GUCGU---UGUGCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 99911 0.71 0.649497
Target:  5'- uGACGUGgGCGcGCGACuACgGCGCCgGCCu -3'
miRNA:   3'- -CUGCGCaUGU-CGUUG-UG-CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 84732 0.7 0.659768
Target:  5'- aGGCGCucGUGguGCucgaggagacGGCGCGCGCC-GCCg -3'
miRNA:   3'- -CUGCG--CAUguCG----------UUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 85345 0.7 0.659768
Target:  5'- --aGCGUGCucGCcGCgcugGCGCGCCUGCg -3'
miRNA:   3'- cugCGCAUGu-CGuUG----UGCGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 64243 0.7 0.659768
Target:  5'- -cCGCG-ACGGCGGCGCGgGCCacGCUc -3'
miRNA:   3'- cuGCGCaUGUCGUUGUGCgCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 99665 0.7 0.659768
Target:  5'- cGCGCGcAgAGCcGCugGgGCCUGCg -3'
miRNA:   3'- cUGCGCaUgUCGuUGugCgCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 126410 0.7 0.670017
Target:  5'- -cCGCGUcGgGGCGAuggcCACGCGCC-GCCg -3'
miRNA:   3'- cuGCGCA-UgUCGUU----GUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 100511 0.7 0.670017
Target:  5'- gGACGCuGUGCGcCGaccACGCGCGCCUGa- -3'
miRNA:   3'- -CUGCG-CAUGUcGU---UGUGCGCGGACgg -5'
29543 3' -56.1 NC_006151.1 + 134734 0.7 0.670017
Target:  5'- cGCGCGggACuuugucgccccgAGCAGCGCGCGCgggGCCc -3'
miRNA:   3'- cUGCGCa-UG------------UCGUUGUGCGCGga-CGG- -5'
29543 3' -56.1 NC_006151.1 + 76955 0.7 0.670017
Target:  5'- cGGCGCagACGGCcGCGCGCGCguagaagGCCa -3'
miRNA:   3'- -CUGCGcaUGUCGuUGUGCGCGga-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 58854 0.7 0.678194
Target:  5'- aGCGCGUGgAGCucGCccgGCGCGCCggguccguccagGCCg -3'
miRNA:   3'- cUGCGCAUgUCGu-UG---UGCGCGGa-----------CGG- -5'
29543 3' -56.1 NC_006151.1 + 135160 0.7 0.680234
Target:  5'- cGGCGgGcGCGGCccgGACGgGCGCCggcUGCCg -3'
miRNA:   3'- -CUGCgCaUGUCG---UUGUgCGCGG---ACGG- -5'
29543 3' -56.1 NC_006151.1 + 103841 0.7 0.680234
Target:  5'- aGAUGCucggGCGGCuGCGCGCGCa-GCCc -3'
miRNA:   3'- -CUGCGca--UGUCGuUGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 105429 0.7 0.680234
Target:  5'- gGGCGCaucgAgAGCAaguacucgGCGCGCGCCgggGCCc -3'
miRNA:   3'- -CUGCGca--UgUCGU--------UGUGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 136742 0.7 0.680234
Target:  5'- uGACGCcg--AGCGuCGCGCGCCUcGCCc -3'
miRNA:   3'- -CUGCGcaugUCGUuGUGCGCGGA-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.