miRNA display CGI


Results 61 - 80 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 16870 0.66 0.871475
Target:  5'- aGAUG-GUACAucGCGGgGCGCGCUcgcguccguUGCCg -3'
miRNA:   3'- -CUGCgCAUGU--CGUUgUGCGCGG---------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 127927 0.66 0.871475
Target:  5'- --aGCGgggGCGGCGAgACGgGCacggGCCa -3'
miRNA:   3'- cugCGCa--UGUCGUUgUGCgCGga--CGG- -5'
29543 3' -56.1 NC_006151.1 + 113028 0.66 0.871475
Target:  5'- cGACGCGUGCgccGGguGCuGCGCGgCgGCg -3'
miRNA:   3'- -CUGCGCAUG---UCguUG-UGCGCgGaCGg -5'
29543 3' -56.1 NC_006151.1 + 85944 0.66 0.871475
Target:  5'- -nUGC-UGCAGCAGC-CGCaCCUGCg -3'
miRNA:   3'- cuGCGcAUGUCGUUGuGCGcGGACGg -5'
29543 3' -56.1 NC_006151.1 + 76076 0.66 0.871475
Target:  5'- gGGCGCcaGCAGCGACAgGgGCggcGCCu -3'
miRNA:   3'- -CUGCGcaUGUCGUUGUgCgCGga-CGG- -5'
29543 3' -56.1 NC_006151.1 + 72534 0.66 0.871475
Target:  5'- -cCGUGUacACAGUuuauauACACGCGCg-GCCg -3'
miRNA:   3'- cuGCGCA--UGUCGu-----UGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 65500 0.66 0.871475
Target:  5'- gGACGC---CGGCGGaGCGCGCCUccuccgcgGCCa -3'
miRNA:   3'- -CUGCGcauGUCGUUgUGCGCGGA--------CGG- -5'
29543 3' -56.1 NC_006151.1 + 65406 0.66 0.871475
Target:  5'- --aGCGaGCGGCggUACGCGuCCaUGUCc -3'
miRNA:   3'- cugCGCaUGUCGuuGUGCGC-GG-ACGG- -5'
29543 3' -56.1 NC_006151.1 + 57458 0.66 0.871475
Target:  5'- -cCGCGUcggcCAGguGC-CGCGCCgcggcgGCCu -3'
miRNA:   3'- cuGCGCAu---GUCguUGuGCGCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 37952 0.66 0.871475
Target:  5'- -cCGCGUGCcccGCgAGCugGCggacGCCUGCg -3'
miRNA:   3'- cuGCGCAUGu--CG-UUGugCG----CGGACGg -5'
29543 3' -56.1 NC_006151.1 + 47276 0.66 0.871475
Target:  5'- cGGCGC--GCAGCGuC-CGCGgCUGCUg -3'
miRNA:   3'- -CUGCGcaUGUCGUuGuGCGCgGACGG- -5'
29543 3' -56.1 NC_006151.1 + 3074 0.66 0.871475
Target:  5'- aGAgGCGguggGCgaaGGCGGCGagcaGCGCCgagagGCCg -3'
miRNA:   3'- -CUgCGCa---UG---UCGUUGUg---CGCGGa----CGG- -5'
29543 3' -56.1 NC_006151.1 + 65998 0.66 0.871475
Target:  5'- aGCGCGUccuccGCGGCGuCGaGCGCCU-CCg -3'
miRNA:   3'- cUGCGCA-----UGUCGUuGUgCGCGGAcGG- -5'
29543 3' -56.1 NC_006151.1 + 38559 0.66 0.871475
Target:  5'- cGGCGCaagaagaAGCGcCGCGCGCCcgggGCCc -3'
miRNA:   3'- -CUGCGcaug---UCGUuGUGCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 127839 0.66 0.871475
Target:  5'- cGugGCGgcgucGCGGCuGCGCcggaggggGCGCCgcccGCCg -3'
miRNA:   3'- -CugCGCa----UGUCGuUGUG--------CGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 118439 0.66 0.871475
Target:  5'- gGAgGUGUGCGcGCGGCuCG-GCCUGgCCg -3'
miRNA:   3'- -CUgCGCAUGU-CGUUGuGCgCGGAC-GG- -5'
29543 3' -56.1 NC_006151.1 + 111128 0.66 0.871475
Target:  5'- cGCGCGUcuguGCGcGCccccGCGCGCGCg-GCCg -3'
miRNA:   3'- cUGCGCA----UGU-CGu---UGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 100904 0.66 0.871475
Target:  5'- cGGCGCGcGCGcGCccgacgacgcgAGCGCGgGCgUGCCc -3'
miRNA:   3'- -CUGCGCaUGU-CG-----------UUGUGCgCGgACGG- -5'
29543 3' -56.1 NC_006151.1 + 95118 0.66 0.871475
Target:  5'- cGGCGaugGCGGCGuugagGCGcCGCGCC-GCCg -3'
miRNA:   3'- -CUGCgcaUGUCGU-----UGU-GCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 91376 0.66 0.871475
Target:  5'- aGCGCGUcgAGC-ACGC-CGCCgcUGCCg -3'
miRNA:   3'- cUGCGCAugUCGuUGUGcGCGG--ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.