miRNA display CGI


Results 81 - 100 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 91376 0.66 0.871475
Target:  5'- aGCGCGUcgAGC-ACGC-CGCCgcUGCCg -3'
miRNA:   3'- cUGCGCAugUCGuUGUGcGCGG--ACGG- -5'
29543 3' -56.1 NC_006151.1 + 47276 0.66 0.871475
Target:  5'- cGGCGC--GCAGCGuC-CGCGgCUGCUg -3'
miRNA:   3'- -CUGCGcaUGUCGUuGuGCGCgGACGG- -5'
29543 3' -56.1 NC_006151.1 + 100619 0.66 0.868508
Target:  5'- uGGCGCGcugggaccugguCAGCGccGCGCuGCGCCgcGCCg -3'
miRNA:   3'- -CUGCGCau----------GUCGU--UGUG-CGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 19280 0.67 0.864749
Target:  5'- cGCGCGgggcccaccggggcCAGCGGCGCGgGCg-GCCg -3'
miRNA:   3'- cUGCGCau------------GUCGUUGUGCgCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 4276 0.67 0.863991
Target:  5'- gGACGCc-GCGGCAggccaggacGCAgGCGUCcGCCa -3'
miRNA:   3'- -CUGCGcaUGUCGU---------UGUgCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 69979 0.67 0.863991
Target:  5'- gGGCGC-UGCAGCGGCGgcaGCGUCaGCa -3'
miRNA:   3'- -CUGCGcAUGUCGUUGUg--CGCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 74133 0.67 0.863991
Target:  5'- uGCGCG-GguGCAGCGgGUGCCggggGUCg -3'
miRNA:   3'- cUGCGCaUguCGUUGUgCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 105109 0.67 0.863991
Target:  5'- aGGCGCGgcucaucaucgACAcGCAcccgcugacgACGCGCGUCgacgGCCg -3'
miRNA:   3'- -CUGCGCa----------UGU-CGU----------UGUGCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 7060 0.67 0.863991
Target:  5'- cGCGCGga-GGCGucuccCGCGCGCCucugauuugcaUGCCc -3'
miRNA:   3'- cUGCGCaugUCGUu----GUGCGCGG-----------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 76176 0.67 0.863991
Target:  5'- cGCGCGaGCuGCuggauGGCGCGCaGCCgcaugGCCg -3'
miRNA:   3'- cUGCGCaUGuCG-----UUGUGCG-CGGa----CGG- -5'
29543 3' -56.1 NC_006151.1 + 94028 0.67 0.863991
Target:  5'- cGCGCGcACguAGCGcuCGCGCGCCgcggcgucGCCg -3'
miRNA:   3'- cUGCGCaUG--UCGUu-GUGCGCGGa-------CGG- -5'
29543 3' -56.1 NC_006151.1 + 54624 0.67 0.862469
Target:  5'- gGGCGCGccccggggggaaGCGGCGGCGCGaGCgCUGCg -3'
miRNA:   3'- -CUGCGCa-----------UGUCGUUGUGCgCG-GACGg -5'
29543 3' -56.1 NC_006151.1 + 22843 0.67 0.861705
Target:  5'- aGCGCGcUGCccaggaagcccaggAGCAGgGCGgGgCUGCCg -3'
miRNA:   3'- cUGCGC-AUG--------------UCGUUgUGCgCgGACGG- -5'
29543 3' -56.1 NC_006151.1 + 115359 0.67 0.859399
Target:  5'- uGACGCcgauGUACuucuucuucgugaugAGCAGCAgGCGCCggaagGUCu -3'
miRNA:   3'- -CUGCG----CAUG---------------UCGUUGUgCGCGGa----CGG- -5'
29543 3' -56.1 NC_006151.1 + 30610 0.67 0.856296
Target:  5'- aACGCGgGCGGuCGGCGUGCGCgCUGUg -3'
miRNA:   3'- cUGCGCaUGUC-GUUGUGCGCG-GACGg -5'
29543 3' -56.1 NC_006151.1 + 39001 0.67 0.856296
Target:  5'- cGCGCGccGCGGCGccccgcuccgccGC-CGCGCC-GCCu -3'
miRNA:   3'- cUGCGCa-UGUCGU------------UGuGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 40134 0.67 0.856296
Target:  5'- cGGCGUccGCGGCGGCgACG-GCCgGCCc -3'
miRNA:   3'- -CUGCGcaUGUCGUUG-UGCgCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 54516 0.67 0.856296
Target:  5'- -uUGUGcGCGGCAuCGCG-GCCUGCUu -3'
miRNA:   3'- cuGCGCaUGUCGUuGUGCgCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 105590 0.67 0.856296
Target:  5'- cGACGCGcGC-GCGGa--GCGgCUGCCg -3'
miRNA:   3'- -CUGCGCaUGuCGUUgugCGCgGACGG- -5'
29543 3' -56.1 NC_006151.1 + 22288 0.67 0.856296
Target:  5'- cGGCGCGggcACGGCGuccACGucCGCGCCgagcGUCg -3'
miRNA:   3'- -CUGCGCa--UGUCGU---UGU--GCGCGGa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.