miRNA display CGI


Results 101 - 120 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 22288 0.67 0.856296
Target:  5'- cGGCGCGggcACGGCGuccACGucCGCGCCgagcGUCg -3'
miRNA:   3'- -CUGCGCa--UGUCGU---UGU--GCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 30610 0.67 0.856296
Target:  5'- aACGCGgGCGGuCGGCGUGCGCgCUGUg -3'
miRNA:   3'- cUGCGCaUGUC-GUUGUGCGCG-GACGg -5'
29543 3' -56.1 NC_006151.1 + 39001 0.67 0.856296
Target:  5'- cGCGCGccGCGGCGccccgcuccgccGC-CGCGCC-GCCu -3'
miRNA:   3'- cUGCGCa-UGUCGU------------UGuGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 40134 0.67 0.856296
Target:  5'- cGGCGUccGCGGCGGCgACG-GCCgGCCc -3'
miRNA:   3'- -CUGCGcaUGUCGUUG-UGCgCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 54516 0.67 0.856296
Target:  5'- -uUGUGcGCGGCAuCGCG-GCCUGCUu -3'
miRNA:   3'- cuGCGCaUGUCGUuGUGCgCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 105590 0.67 0.856296
Target:  5'- cGACGCGcGC-GCGGa--GCGgCUGCCg -3'
miRNA:   3'- -CUGCGCaUGuCGUUgugCGCgGACGG- -5'
29543 3' -56.1 NC_006151.1 + 105751 0.67 0.856296
Target:  5'- aGCGCGU--GGCG--GCGCGCCUGg- -3'
miRNA:   3'- cUGCGCAugUCGUugUGCGCGGACgg -5'
29543 3' -56.1 NC_006151.1 + 132804 0.67 0.855515
Target:  5'- aGGCGCugGUACAGCGcguccggGCugGCcGCCcGCg -3'
miRNA:   3'- -CUGCG--CAUGUCGU-------UGugCG-CGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 40416 0.67 0.855515
Target:  5'- cGGCGgccucgguccccuCGgccCGGCGGCGCuugccuccccgGCGCCUGCCu -3'
miRNA:   3'- -CUGC-------------GCau-GUCGUUGUG-----------CGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 45180 0.67 0.853947
Target:  5'- gGugGCGUgcccgccaccacggACGGCGACGgggUGCGCCgcGCUc -3'
miRNA:   3'- -CugCGCA--------------UGUCGUUGU---GCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 70090 0.67 0.848396
Target:  5'- uGCGCGUggGCGGCGAaGgGCGCgaGCg -3'
miRNA:   3'- cUGCGCA--UGUCGUUgUgCGCGgaCGg -5'
29543 3' -56.1 NC_006151.1 + 85567 0.67 0.848396
Target:  5'- aACGUGUACGGgGAC---CGCCUGCg -3'
miRNA:   3'- cUGCGCAUGUCgUUGugcGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 103743 0.67 0.848396
Target:  5'- uGGCGCGgcAguGCGAggaGCGCGCCgcgGCg -3'
miRNA:   3'- -CUGCGCa-UguCGUUg--UGCGCGGa--CGg -5'
29543 3' -56.1 NC_006151.1 + 137386 0.67 0.848396
Target:  5'- uACGUGUACA--AGa--GCGCCUGCCc -3'
miRNA:   3'- cUGCGCAUGUcgUUgugCGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 138330 0.67 0.848396
Target:  5'- -cUGCGggccCGGCAcGCGCGCaGCCcGCCg -3'
miRNA:   3'- cuGCGCau--GUCGU-UGUGCG-CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 5083 0.67 0.848396
Target:  5'- -cCGCGggGCcGCGGCGgGCGCCgGCg -3'
miRNA:   3'- cuGCGCa-UGuCGUUGUgCGCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 114148 0.67 0.848396
Target:  5'- -cCGCGgcucgggcGCAGCGAC-CGCGCg-GCCc -3'
miRNA:   3'- cuGCGCa-------UGUCGUUGuGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 135376 0.67 0.848396
Target:  5'- -cCGCGUGCGccGCGAcCACGgCGUCcagGCCg -3'
miRNA:   3'- cuGCGCAUGU--CGUU-GUGC-GCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 85112 0.67 0.848396
Target:  5'- cGGCGCucgAgAGCGccGCGCuGUGCCUGCa -3'
miRNA:   3'- -CUGCGca-UgUCGU--UGUG-CGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 123059 0.67 0.840297
Target:  5'- cGGCGC-UGC-GCGACGCcgagcgccggcgGCGCCUGUa -3'
miRNA:   3'- -CUGCGcAUGuCGUUGUG------------CGCGGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.