miRNA display CGI


Results 121 - 140 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 70922 0.67 0.840297
Target:  5'- cGCGCGUGCuGGCGcuGCACGaCGgC-GCCu -3'
miRNA:   3'- cUGCGCAUG-UCGU--UGUGC-GCgGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 69406 0.67 0.840297
Target:  5'- gGGCGUGaGCAGgAGCucguCGCGCCaggcggcGCCg -3'
miRNA:   3'- -CUGCGCaUGUCgUUGu---GCGCGGa------CGG- -5'
29543 3' -56.1 NC_006151.1 + 67977 0.67 0.840297
Target:  5'- cACGCaGUcGCGGCGGCccGCcgGCGCCgcgGCCa -3'
miRNA:   3'- cUGCG-CA-UGUCGUUG--UG--CGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 61773 0.67 0.840297
Target:  5'- -cCGUgGUGCuGCGGCGCGagGCCgGCCg -3'
miRNA:   3'- cuGCG-CAUGuCGUUGUGCg-CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 57937 0.67 0.840297
Target:  5'- aGGCGCGga-AGCcgAGCGCGgGCCacaGCCc -3'
miRNA:   3'- -CUGCGCaugUCG--UUGUGCgCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 54690 0.67 0.840297
Target:  5'- uGCGCGUcgcCGGCA--GCGUGCUggGCCa -3'
miRNA:   3'- cUGCGCAu--GUCGUugUGCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 54072 0.67 0.840297
Target:  5'- uGGCGCGcggacccucUGCGGCGGCG-GCGgCgGCCa -3'
miRNA:   3'- -CUGCGC---------AUGUCGUUGUgCGCgGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 104583 0.67 0.840297
Target:  5'- gGACGUGcugcaggccgGCGGCAGcCGCgGCGCCgagaucUGCCg -3'
miRNA:   3'- -CUGCGCa---------UGUCGUU-GUG-CGCGG------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 54111 0.67 0.840297
Target:  5'- cGGCuGCGacgGCGGCGGCugcggACGgGCuCUGCCc -3'
miRNA:   3'- -CUG-CGCa--UGUCGUUG-----UGCgCG-GACGG- -5'
29543 3' -56.1 NC_006151.1 + 140472 0.67 0.840297
Target:  5'- gGACGCGcuggacucccACAaaaccggcuGCGACGCGCccaCCUGCCg -3'
miRNA:   3'- -CUGCGCa---------UGU---------CGUUGUGCGc--GGACGG- -5'
29543 3' -56.1 NC_006151.1 + 123059 0.67 0.840297
Target:  5'- cGGCGC-UGC-GCGACGCcgagcgccggcgGCGCCUGUa -3'
miRNA:   3'- -CUGCGcAUGuCGUUGUG------------CGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 104106 0.67 0.840297
Target:  5'- cGACGCGgcCgAGUu-CGUGCGCCUGCg -3'
miRNA:   3'- -CUGCGCauG-UCGuuGUGCGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 84647 0.67 0.840297
Target:  5'- aACGCcaugGCcGCgGGCGCGCGCCUcgagGCCg -3'
miRNA:   3'- cUGCGca--UGuCG-UUGUGCGCGGA----CGG- -5'
29543 3' -56.1 NC_006151.1 + 77522 0.67 0.840297
Target:  5'- uGGCGCGccuCGGCcGCGCGUggGCC-GCCc -3'
miRNA:   3'- -CUGCGCau-GUCGuUGUGCG--CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 67865 0.67 0.840297
Target:  5'- cGGCGCcga-GGUGgcGCGCGCGCCaGCCc -3'
miRNA:   3'- -CUGCGcaugUCGU--UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 62363 0.67 0.840297
Target:  5'- aGACGC--ACGGCGucgucaucgggACGCGCGCCguccugGCg -3'
miRNA:   3'- -CUGCGcaUGUCGU-----------UGUGCGCGGa-----CGg -5'
29543 3' -56.1 NC_006151.1 + 56039 0.67 0.840297
Target:  5'- cGCGCGUcgAgGGCGGCGCGCugacGCUgcGCCu -3'
miRNA:   3'- cUGCGCA--UgUCGUUGUGCG----CGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 142916 0.67 0.839477
Target:  5'- cGGCGCGgGCAccGaCAccguccccaccacACGCGCGCCcGCCc -3'
miRNA:   3'- -CUGCGCaUGU--C-GU-------------UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 53472 0.67 0.839477
Target:  5'- cGCGCGaacgccgGCAGCGagccgugGCACGCGaagGCCa -3'
miRNA:   3'- cUGCGCa------UGUCGU-------UGUGCGCggaCGG- -5'
29543 3' -56.1 NC_006151.1 + 56913 0.67 0.835346
Target:  5'- cGGCGUGUauguaaacacaaaugGCGGCGGgGCGuCGCCgGCg -3'
miRNA:   3'- -CUGCGCA---------------UGUCGUUgUGC-GCGGaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.