miRNA display CGI


Results 141 - 160 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 74513 0.67 0.832007
Target:  5'- --aGCGgggGCAGCAGCgugGCGUCcGCCa -3'
miRNA:   3'- cugCGCa--UGUCGUUGug-CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 55181 0.67 0.832007
Target:  5'- gGGCGCGcauccuggACAGCGuggACACGuCGCa-GCCg -3'
miRNA:   3'- -CUGCGCa-------UGUCGU---UGUGC-GCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 66093 0.67 0.832007
Target:  5'- cACGCGggccUGCAGC-GCGCGCGCUuuuUGUUc -3'
miRNA:   3'- cUGCGC----AUGUCGuUGUGCGCGG---ACGG- -5'
29543 3' -56.1 NC_006151.1 + 26977 0.67 0.832007
Target:  5'- aGCGCGcugcGCAGCGGgGCGC-UCUGCUc -3'
miRNA:   3'- cUGCGCa---UGUCGUUgUGCGcGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 31958 0.67 0.832007
Target:  5'- uGACGcCGgggAC-GCGGgACGUGCCcGCCg -3'
miRNA:   3'- -CUGC-GCa--UGuCGUUgUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 78641 0.67 0.832007
Target:  5'- cGACGCGUGCgagcugguggaGGCGGCcgggGCGCGggUGCUg -3'
miRNA:   3'- -CUGCGCAUG-----------UCGUUG----UGCGCggACGG- -5'
29543 3' -56.1 NC_006151.1 + 92644 0.67 0.832007
Target:  5'- uGCGCGacgcCGGCAAgGCGCucgcCCUGCUg -3'
miRNA:   3'- cUGCGCau--GUCGUUgUGCGc---GGACGG- -5'
29543 3' -56.1 NC_006151.1 + 102272 0.67 0.832007
Target:  5'- gGGCGCGcUGCcGgAGCGCG-GCCcgGCCg -3'
miRNA:   3'- -CUGCGC-AUGuCgUUGUGCgCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 116204 0.67 0.832007
Target:  5'- uGGCGCGcGCgAGCGugAuguuggcgagcCGCGCCacgGCCg -3'
miRNA:   3'- -CUGCGCaUG-UCGUugU-----------GCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 119188 0.67 0.832007
Target:  5'- cGACGCGggcGCcGcCGACGCGCGCaaggagggcGCCg -3'
miRNA:   3'- -CUGCGCa--UGuC-GUUGUGCGCGga-------CGG- -5'
29543 3' -56.1 NC_006151.1 + 134773 0.67 0.832007
Target:  5'- -cCGCGgcuuCGGCucCACGgGCCUGUg -3'
miRNA:   3'- cuGCGCau--GUCGuuGUGCgCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 128043 0.67 0.832007
Target:  5'- -cCGCGgcagcgGCGGCAGCG-GCGgCUGCg -3'
miRNA:   3'- cuGCGCa-----UGUCGUUGUgCGCgGACGg -5'
29543 3' -56.1 NC_006151.1 + 121290 0.67 0.826945
Target:  5'- gGGCGCGUggccgACcGCGACGgGCGCUggagcguggaggcgGCCg -3'
miRNA:   3'- -CUGCGCA-----UGuCGUUGUgCGCGGa-------------CGG- -5'
29543 3' -56.1 NC_006151.1 + 63589 0.67 0.824389
Target:  5'- uGGCGCGgguucgcgaacacggGCAcccuCAGCGCGCGCUcGCCc -3'
miRNA:   3'- -CUGCGCa--------------UGUc---GUUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 50014 0.67 0.823534
Target:  5'- cGCGCGcGCGGCccGCGCGgCGCCcccgggcgcgGCCa -3'
miRNA:   3'- cUGCGCaUGUCGu-UGUGC-GCGGa---------CGG- -5'
29543 3' -56.1 NC_006151.1 + 122663 0.67 0.823534
Target:  5'- cGGCGCGaGCgccgcgccgAGguGCGCGCGgCgGCCg -3'
miRNA:   3'- -CUGCGCaUG---------UCguUGUGCGCgGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 114313 0.67 0.823534
Target:  5'- uACGUGcUGC-GCGACGgGgGCCUGCg -3'
miRNA:   3'- cUGCGC-AUGuCGUUGUgCgCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 90199 0.67 0.823534
Target:  5'- aGCGCGcagACGGCccacAGCAgGaCGCCgGCCg -3'
miRNA:   3'- cUGCGCa--UGUCG----UUGUgC-GCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 89296 0.67 0.823534
Target:  5'- -cCGCGUAgagcgcCAGCAgagcgagcaucGCACGCGCgaGCg -3'
miRNA:   3'- cuGCGCAU------GUCGU-----------UGUGCGCGgaCGg -5'
29543 3' -56.1 NC_006151.1 + 87320 0.67 0.823534
Target:  5'- cACGcCGUGcCGGCGcuCcCGgGCCUGCCg -3'
miRNA:   3'- cUGC-GCAU-GUCGUu-GuGCgCGGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.