miRNA display CGI


Results 161 - 180 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 55437 0.67 0.823534
Target:  5'- gGGCGCGgACGGgacCGGCGC-CGCCgGCCc -3'
miRNA:   3'- -CUGCGCaUGUC---GUUGUGcGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 57847 0.67 0.823534
Target:  5'- cACGgGUgcuccACGGCGcugguCGCGCGCCccGCCg -3'
miRNA:   3'- cUGCgCA-----UGUCGUu----GUGCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 87320 0.67 0.823534
Target:  5'- cACGcCGUGcCGGCGcuCcCGgGCCUGCCg -3'
miRNA:   3'- cUGC-GCAU-GUCGUu-GuGCgCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 87601 0.67 0.823534
Target:  5'- cGACGCcagcuCGGCcGC-CGUgGCCUGCCa -3'
miRNA:   3'- -CUGCGcau--GUCGuUGuGCG-CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 50014 0.67 0.823534
Target:  5'- cGCGCGcGCGGCccGCGCGgCGCCcccgggcgcgGCCa -3'
miRNA:   3'- cUGCGCaUGUCGu-UGUGC-GCGGa---------CGG- -5'
29543 3' -56.1 NC_006151.1 + 122663 0.67 0.823534
Target:  5'- cGGCGCGaGCgccgcgccgAGguGCGCGCGgCgGCCg -3'
miRNA:   3'- -CUGCGCaUG---------UCguUGUGCGCgGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 114313 0.67 0.823534
Target:  5'- uACGUGcUGC-GCGACGgGgGCCUGCg -3'
miRNA:   3'- cUGCGC-AUGuCGUUGUgCgCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 90199 0.67 0.823534
Target:  5'- aGCGCGcagACGGCccacAGCAgGaCGCCgGCCg -3'
miRNA:   3'- cUGCGCa--UGUCG----UUGUgC-GCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 89296 0.67 0.823534
Target:  5'- -cCGCGUAgagcgcCAGCAgagcgagcaucGCACGCGCgaGCg -3'
miRNA:   3'- cuGCGCAU------GUCGU-----------UGUGCGCGgaCGg -5'
29543 3' -56.1 NC_006151.1 + 86632 0.67 0.822676
Target:  5'- aGCGCGUgugGCacaugagcgaggaGGCGcucACGCGCGCgCUGCUc -3'
miRNA:   3'- cUGCGCA---UG-------------UCGU---UGUGCGCG-GACGG- -5'
29543 3' -56.1 NC_006151.1 + 99302 0.68 0.814884
Target:  5'- cGCGcCGUGCuGgAcCGCGCGCCccGCCu -3'
miRNA:   3'- cUGC-GCAUGuCgUuGUGCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 115200 0.68 0.814884
Target:  5'- aGCGCGccGCGGgcGCGCGCGCgaucguggccgCUGCCg -3'
miRNA:   3'- cUGCGCa-UGUCguUGUGCGCG-----------GACGG- -5'
29543 3' -56.1 NC_006151.1 + 122934 0.68 0.814884
Target:  5'- cGACGCGgacgccgACGGCGGCGCcgcgggggGCGCggacGCCg -3'
miRNA:   3'- -CUGCGCa------UGUCGUUGUG--------CGCGga--CGG- -5'
29543 3' -56.1 NC_006151.1 + 139223 0.68 0.814884
Target:  5'- cGACGC-UGCcGCAcaucGCGCGCGUCU-CCg -3'
miRNA:   3'- -CUGCGcAUGuCGU----UGUGCGCGGAcGG- -5'
29543 3' -56.1 NC_006151.1 + 15897 0.68 0.814884
Target:  5'- gGACGCGcGCccCGACGCG-GCCcGCCg -3'
miRNA:   3'- -CUGCGCaUGucGUUGUGCgCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 70504 0.68 0.814884
Target:  5'- gGugGCGcACAcCGACGCcacCGCCUGCUc -3'
miRNA:   3'- -CugCGCaUGUcGUUGUGc--GCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 88387 0.68 0.814884
Target:  5'- aGCGCGUccGCGGCGucCGCG-GCCgcgagGCCc -3'
miRNA:   3'- cUGCGCA--UGUCGUu-GUGCgCGGa----CGG- -5'
29543 3' -56.1 NC_006151.1 + 100718 0.68 0.814884
Target:  5'- cGCGCGaGgAGCAggcgccGCcCGCGCCcGCCu -3'
miRNA:   3'- cUGCGCaUgUCGU------UGuGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 102550 0.68 0.814884
Target:  5'- uGGCGCGcGC-GCGggcccuguuuGCGCGCGCCcGCg -3'
miRNA:   3'- -CUGCGCaUGuCGU----------UGUGCGCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 85669 0.68 0.814884
Target:  5'- --aGCGgcgACGGCAACcuGCGCuuCCUGCUg -3'
miRNA:   3'- cugCGCa--UGUCGUUG--UGCGc-GGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.