miRNA display CGI


Results 41 - 60 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 36633 0.69 0.73054
Target:  5'- cGGCGCccgGCGGCGGCG-GCGCCcccuccGCCg -3'
miRNA:   3'- -CUGCGca-UGUCGUUGUgCGCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 37446 0.66 0.878742
Target:  5'- gGACGaCGUccgccaggccGCGGCccgcuAC-CGCGCCgcgGCCg -3'
miRNA:   3'- -CUGC-GCA----------UGUCGu----UGuGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 37952 0.66 0.871475
Target:  5'- -cCGCGUGCcccGCgAGCugGCggacGCCUGCg -3'
miRNA:   3'- cuGCGCAUGu--CG-UUGugCG----CGGACGg -5'
29543 3' -56.1 NC_006151.1 + 38200 0.66 0.871475
Target:  5'- uGCGC-UACAGCGugGacggggccCGCGCCcgcgagGCCg -3'
miRNA:   3'- cUGCGcAUGUCGUugU--------GCGCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 38386 0.74 0.469339
Target:  5'- cGGCGCcgGCGGCGGCGgGCGCCcccuccgGCCu -3'
miRNA:   3'- -CUGCGcaUGUCGUUGUgCGCGGa------CGG- -5'
29543 3' -56.1 NC_006151.1 + 38559 0.66 0.871475
Target:  5'- cGGCGCaagaagaAGCGcCGCGCGCCcgggGCCc -3'
miRNA:   3'- -CUGCGcaug---UCGUuGUGCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 39001 0.67 0.856296
Target:  5'- cGCGCGccGCGGCGccccgcuccgccGC-CGCGCC-GCCu -3'
miRNA:   3'- cUGCGCa-UGUCGU------------UGuGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 39338 0.66 0.885787
Target:  5'- -uCGCGgcuCGGCGcgGCGCgGCGCCgGCUc -3'
miRNA:   3'- cuGCGCau-GUCGU--UGUG-CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 40134 0.67 0.856296
Target:  5'- cGGCGUccGCGGCGGCgACG-GCCgGCCc -3'
miRNA:   3'- -CUGCGcaUGUCGUUG-UGCgCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 40416 0.67 0.855515
Target:  5'- cGGCGgccucgguccccuCGgccCGGCGGCGCuugccuccccgGCGCCUGCCu -3'
miRNA:   3'- -CUGC-------------GCau-GUCGUUGUG-----------CGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 42994 0.71 0.628921
Target:  5'- aGAUGCGggggAgGGCGGCGgGCGCUUGgCa -3'
miRNA:   3'- -CUGCGCa---UgUCGUUGUgCGCGGACgG- -5'
29543 3' -56.1 NC_006151.1 + 45180 0.67 0.853947
Target:  5'- gGugGCGUgcccgccaccacggACGGCGACGgggUGCGCCgcGCUc -3'
miRNA:   3'- -CugCGCA--------------UGUCGUUGU---GCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 46606 0.66 0.885787
Target:  5'- aGGCGCGaGCAGaGACGgacccgGUGCCUGCg -3'
miRNA:   3'- -CUGCGCaUGUCgUUGUg-----CGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 47276 0.66 0.871475
Target:  5'- cGGCGC--GCAGCGuC-CGCGgCUGCUg -3'
miRNA:   3'- -CUGCGcaUGUCGUuGuGCGCgGACGG- -5'
29543 3' -56.1 NC_006151.1 + 47386 0.66 0.892606
Target:  5'- aGugGCacucagACAGCAcuuuggcCugGCGCCcgGCCa -3'
miRNA:   3'- -CugCGca----UGUCGUu------GugCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 47520 0.78 0.283209
Target:  5'- -cCGCuaauUGCAGUAACGCGCGgCUGCCa -3'
miRNA:   3'- cuGCGc---AUGUCGUUGUGCGCgGACGG- -5'
29543 3' -56.1 NC_006151.1 + 47761 0.74 0.478793
Target:  5'- uGCGCGaUGCGGCGAU-CGCGCCgaGCUg -3'
miRNA:   3'- cUGCGC-AUGUCGUUGuGCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 48876 0.67 0.823534
Target:  5'- aGAuCGCca--AGCcguACGCGCGCCUGCg -3'
miRNA:   3'- -CU-GCGcaugUCGu--UGUGCGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 49121 0.66 0.878742
Target:  5'- gGGCGaCGUACccgacGCuGCcCGCGCCcGCCc -3'
miRNA:   3'- -CUGC-GCAUGu----CGuUGuGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 49833 0.66 0.892606
Target:  5'- gGACGaCG-ACGGCGGCgGCGgGCCcGCg -3'
miRNA:   3'- -CUGC-GCaUGUCGUUG-UGCgCGGaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.