miRNA display CGI


Results 81 - 100 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 54946 0.74 0.44157
Target:  5'- cACGCGcUGCgcgAGC-ACGCGCGCCUcuGCCa -3'
miRNA:   3'- cUGCGC-AUG---UCGuUGUGCGCGGA--CGG- -5'
29543 3' -56.1 NC_006151.1 + 55181 0.67 0.832007
Target:  5'- gGGCGCGcauccuggACAGCGuggACACGuCGCa-GCCg -3'
miRNA:   3'- -CUGCGCa-------UGUCGU---UGUGC-GCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 55382 0.68 0.787962
Target:  5'- aGCGCGaGCAGgAgguGCG-GCGCCUGCg -3'
miRNA:   3'- cUGCGCaUGUCgU---UGUgCGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 55437 0.67 0.823534
Target:  5'- gGGCGCGgACGGgacCGGCGC-CGCCgGCCc -3'
miRNA:   3'- -CUGCGCaUGUC---GUUGUGcGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 55821 0.67 0.856296
Target:  5'- gGACcUGUGCGGCGugguguuuaagaAgACGCGCCUcgagGCCu -3'
miRNA:   3'- -CUGcGCAUGUCGU------------UgUGCGCGGA----CGG- -5'
29543 3' -56.1 NC_006151.1 + 55880 0.66 0.885787
Target:  5'- cGGCGCuGUcGCGGCgGACGUGCGCCggGCg -3'
miRNA:   3'- -CUGCG-CA-UGUCG-UUGUGCGCGGa-CGg -5'
29543 3' -56.1 NC_006151.1 + 56039 0.67 0.840297
Target:  5'- cGCGCGUcgAgGGCGGCGCGCugacGCUgcGCCu -3'
miRNA:   3'- cUGCGCA--UgUCGUUGUGCG----CGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 56363 0.73 0.527365
Target:  5'- cGGCGCGga-AGCuACG-GCGCCUGCUg -3'
miRNA:   3'- -CUGCGCaugUCGuUGUgCGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 56456 0.73 0.534317
Target:  5'- cGCGCGUGCuGCccCACuaccccaucgcccaGCGCCUGCUg -3'
miRNA:   3'- cUGCGCAUGuCGuuGUG--------------CGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 56600 0.69 0.740381
Target:  5'- gGACGCGcccCGGCGGCGCGCucaccgcgccCCUGCg -3'
miRNA:   3'- -CUGCGCau-GUCGUUGUGCGc---------GGACGg -5'
29543 3' -56.1 NC_006151.1 + 56913 0.67 0.835346
Target:  5'- cGGCGUGUauguaaacacaaaugGCGGCGGgGCGuCGCCgGCg -3'
miRNA:   3'- -CUGCGCA---------------UGUCGUUgUGC-GCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 57101 0.76 0.356254
Target:  5'- aGCGCc-GCgAGCAGCGCGCGCC-GCCg -3'
miRNA:   3'- cUGCGcaUG-UCGUUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 57226 0.69 0.759765
Target:  5'- aGGC-CGUcGCAGgCGGCGCGCGCg-GCCu -3'
miRNA:   3'- -CUGcGCA-UGUC-GUUGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 57298 0.69 0.750125
Target:  5'- aGCGCGgccuUGGCGGCGCG-GCCgaaGCCg -3'
miRNA:   3'- cUGCGCau--GUCGUUGUGCgCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 57458 0.66 0.871475
Target:  5'- -cCGCGUcggcCAGguGC-CGCGCCgcggcgGCCu -3'
miRNA:   3'- cuGCGCAu---GUCguUGuGCGCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 57732 0.68 0.797089
Target:  5'- cGCGCGcGCccGCAcgGCGCGCCgcaGCCg -3'
miRNA:   3'- cUGCGCaUGu-CGUugUGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 57847 0.67 0.823534
Target:  5'- cACGgGUgcuccACGGCGcugguCGCGCGCCccGCCg -3'
miRNA:   3'- cUGCgCA-----UGUCGUu----GUGCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 57937 0.67 0.840297
Target:  5'- aGGCGCGga-AGCcgAGCGCGgGCCacaGCCc -3'
miRNA:   3'- -CUGCGCaugUCG--UUGUGCgCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 58225 0.75 0.423583
Target:  5'- cGCGCGggACgAGC-ACGCGCGCC-GCCa -3'
miRNA:   3'- cUGCGCa-UG-UCGuUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 58315 0.76 0.380605
Target:  5'- --gGCGUuuCAGCGGCgGCGCGCCgGCCu -3'
miRNA:   3'- cugCGCAu-GUCGUUG-UGCGCGGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.