miRNA display CGI


Results 101 - 120 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 58424 0.68 0.777758
Target:  5'- --gGCGUGCGGCAGcCACGCcucggugGCgUGCg -3'
miRNA:   3'- cugCGCAUGUCGUU-GUGCG-------CGgACGg -5'
29543 3' -56.1 NC_006151.1 + 58854 0.7 0.678194
Target:  5'- aGCGCGUGgAGCucGCccgGCGCGCCggguccguccagGCCg -3'
miRNA:   3'- cUGCGCAUgUCGu-UG---UGCGCGGa-----------CGG- -5'
29543 3' -56.1 NC_006151.1 + 59002 0.69 0.73054
Target:  5'- aGCGCGgcgucCAGCGGCGCGUcgaaGCC-GCCc -3'
miRNA:   3'- cUGCGCau---GUCGUUGUGCG----CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 59165 0.68 0.778693
Target:  5'- cGGCGuCGcGCAGCAGCGCGgCGaUCUcgGCCu -3'
miRNA:   3'- -CUGC-GCaUGUCGUUGUGC-GC-GGA--CGG- -5'
29543 3' -56.1 NC_006151.1 + 59516 0.68 0.797089
Target:  5'- cGACGCGcgcGCAGCGcCGCGUGaggGCCc -3'
miRNA:   3'- -CUGCGCa--UGUCGUuGUGCGCggaCGG- -5'
29543 3' -56.1 NC_006151.1 + 59651 0.7 0.710611
Target:  5'- aGACGCGcucgcugcGCAGCGccucggggacGCGCGCGCacgcGCCg -3'
miRNA:   3'- -CUGCGCa-------UGUCGU----------UGUGCGCGga--CGG- -5'
29543 3' -56.1 NC_006151.1 + 59904 0.68 0.768343
Target:  5'- cGCGCGUcgcgcagaaagucGCAGaagGCGCGCGCC-GUCa -3'
miRNA:   3'- cUGCGCA-------------UGUCgu-UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 60033 0.66 0.899193
Target:  5'- --aGCGUGCAGCGcucgaACAgGUGCUUGa- -3'
miRNA:   3'- cugCGCAUGUCGU-----UGUgCGCGGACgg -5'
29543 3' -56.1 NC_006151.1 + 60129 0.71 0.612464
Target:  5'- uGCGCGcACAcgagguucgucaccuGCGACagGCGCGCCgGCCa -3'
miRNA:   3'- cUGCGCaUGU---------------CGUUG--UGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 60184 0.71 0.608355
Target:  5'- cGACGUGguuCAGCAGCACGgGCgUGa- -3'
miRNA:   3'- -CUGCGCau-GUCGUUGUGCgCGgACgg -5'
29543 3' -56.1 NC_006151.1 + 60538 0.72 0.577658
Target:  5'- aGACGuUGUcccccGCGGCGagGCGCGCGCCcaggagGCCg -3'
miRNA:   3'- -CUGC-GCA-----UGUCGU--UGUGCGCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 60854 0.72 0.591951
Target:  5'- cGugGCGUccaugacgaggacccGCGGCAGC-CGCGCagcaGCCg -3'
miRNA:   3'- -CugCGCA---------------UGUCGUUGuGCGCGga--CGG- -5'
29543 3' -56.1 NC_006151.1 + 61773 0.67 0.840297
Target:  5'- -cCGUgGUGCuGCGGCGCGagGCCgGCCg -3'
miRNA:   3'- cuGCG-CAUGuCGUUGUGCg-CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 62049 0.69 0.73054
Target:  5'- -cCGCGUgGCGGUGcacGCGCGCGCC-GUCg -3'
miRNA:   3'- cuGCGCA-UGUCGU---UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 62363 0.67 0.840297
Target:  5'- aGACGC--ACGGCGucgucaucgggACGCGCGCCguccugGCg -3'
miRNA:   3'- -CUGCGcaUGUCGU-----------UGUGCGCGGa-----CGg -5'
29543 3' -56.1 NC_006151.1 + 62504 0.69 0.73842
Target:  5'- aGGCGCGgacgACGGCccggcgguaccuGCAgaaGCGCCUGCa -3'
miRNA:   3'- -CUGCGCa---UGUCGu-----------UGUg--CGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 63329 0.69 0.750125
Target:  5'- uGACGCGaaaGGCcuccucGGCGCGCGCCcGCa -3'
miRNA:   3'- -CUGCGCaugUCG------UUGUGCGCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 63393 0.67 0.823534
Target:  5'- gGGCGUGacgauCAGCAGCACGgGCacgGCg -3'
miRNA:   3'- -CUGCGCau---GUCGUUGUGCgCGga-CGg -5'
29543 3' -56.1 NC_006151.1 + 63589 0.67 0.824389
Target:  5'- uGGCGCGgguucgcgaacacggGCAcccuCAGCGCGCGCUcGCCc -3'
miRNA:   3'- -CUGCGCa--------------UGUc---GUUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 63703 0.72 0.587861
Target:  5'- uGCGCGUucGCGGCGACgugGCGCCcGUCg -3'
miRNA:   3'- cUGCGCA--UGUCGUUGug-CGCGGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.