miRNA display CGI


Results 121 - 140 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 63912 0.69 0.73054
Target:  5'- cGCGCGUAC----GCGCGCGCCgugggGCUc -3'
miRNA:   3'- cUGCGCAUGucguUGUGCGCGGa----CGG- -5'
29543 3' -56.1 NC_006151.1 + 64243 0.7 0.659768
Target:  5'- -cCGCG-ACGGCGGCGCGgGCCacGCUc -3'
miRNA:   3'- cuGCGCaUGUCGUUGUGCgCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 64305 0.71 0.628921
Target:  5'- --gGCGUGCcGCAGCGCGCcguGCUgGCCu -3'
miRNA:   3'- cugCGCAUGuCGUUGUGCG---CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 64438 0.75 0.392342
Target:  5'- cGCGCGUggccGCcuccaccgucaggauGGCGGCGCGCGCC-GCCg -3'
miRNA:   3'- cUGCGCA----UG---------------UCGUUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 64499 0.83 0.137516
Target:  5'- gGGCGCGgGCGGCgGGCGCGCGCC-GCCa -3'
miRNA:   3'- -CUGCGCaUGUCG-UUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 64602 0.73 0.497974
Target:  5'- aGGCG-GUACgccAGCGGCGcCGCGCCgccgGCCg -3'
miRNA:   3'- -CUGCgCAUG---UCGUUGU-GCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 64939 0.68 0.797089
Target:  5'- cGCGCGU-CAGCGcCugGCcGCgCUGCg -3'
miRNA:   3'- cUGCGCAuGUCGUuGugCG-CG-GACGg -5'
29543 3' -56.1 NC_006151.1 + 65362 0.66 0.899193
Target:  5'- aGACGCGccccaggGCGuGCAcCACGUGCCccgggcgcGCCg -3'
miRNA:   3'- -CUGCGCa------UGU-CGUuGUGCGCGGa-------CGG- -5'
29543 3' -56.1 NC_006151.1 + 65406 0.66 0.871475
Target:  5'- --aGCGaGCGGCggUACGCGuCCaUGUCc -3'
miRNA:   3'- cugCGCaUGUCGuuGUGCGC-GG-ACGG- -5'
29543 3' -56.1 NC_006151.1 + 65500 0.66 0.871475
Target:  5'- gGACGC---CGGCGGaGCGCGCCUccuccgcgGCCa -3'
miRNA:   3'- -CUGCGcauGUCGUUgUGCGCGGA--------CGG- -5'
29543 3' -56.1 NC_006151.1 + 65804 0.66 0.874408
Target:  5'- cGGCGCGgACgugccgcgguggaugGGCGGC-CGCGCCagcgcgGCCc -3'
miRNA:   3'- -CUGCGCaUG---------------UCGUUGuGCGCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 65998 0.66 0.871475
Target:  5'- aGCGCGUccuccGCGGCGuCGaGCGCCU-CCg -3'
miRNA:   3'- cUGCGCA-----UGUCGUuGUgCGCGGAcGG- -5'
29543 3' -56.1 NC_006151.1 + 66093 0.67 0.832007
Target:  5'- cACGCGggccUGCAGC-GCGCGCGCUuuuUGUUc -3'
miRNA:   3'- cUGCGC----AUGUCGuUGUGCGCGG---ACGG- -5'
29543 3' -56.1 NC_006151.1 + 66549 0.69 0.759765
Target:  5'- gGGCGCGcGCGGC----CGCGCC-GCCg -3'
miRNA:   3'- -CUGCGCaUGUCGuuguGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 67285 0.69 0.750125
Target:  5'- uGCGCcgcugGUGCcGCGACGCGCGCgUGgaCCa -3'
miRNA:   3'- cUGCG-----CAUGuCGUUGUGCGCGgAC--GG- -5'
29543 3' -56.1 NC_006151.1 + 67355 0.69 0.73054
Target:  5'- cGGCGCGcGCAGCAcCAuCGUGUUcGCCu -3'
miRNA:   3'- -CUGCGCaUGUCGUuGU-GCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 67472 0.69 0.759765
Target:  5'- aGCGCGcGCAGCAGCGgGCaCCcGCa -3'
miRNA:   3'- cUGCGCaUGUCGUUGUgCGcGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 67801 0.68 0.814884
Target:  5'- cACGCGgcacucGCGGCAGCA-GCuGCC-GCCg -3'
miRNA:   3'- cUGCGCa-----UGUCGUUGUgCG-CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 67865 0.67 0.840297
Target:  5'- cGGCGCcga-GGUGgcGCGCGCGCCaGCCc -3'
miRNA:   3'- -CUGCGcaugUCGU--UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 67937 0.73 0.507693
Target:  5'- aGACGCGgcCGcGCGcccacCACGCGCCggggGCCa -3'
miRNA:   3'- -CUGCGCauGU-CGUu----GUGCGCGGa---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.