miRNA display CGI


Results 141 - 160 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 67977 0.67 0.840297
Target:  5'- cACGCaGUcGCGGCGGCccGCcgGCGCCgcgGCCa -3'
miRNA:   3'- cUGCG-CA-UGUCGUUG--UG--CGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 68258 0.76 0.356254
Target:  5'- aGACGCGcGCGGCGACggucGCgGCGCCgggcGCCa -3'
miRNA:   3'- -CUGCGCaUGUCGUUG----UG-CGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 68606 0.76 0.380605
Target:  5'- cGACGCGccucggaAGCGACACGCGaaCUGCCc -3'
miRNA:   3'- -CUGCGCaug----UCGUUGUGCGCg-GACGG- -5'
29543 3' -56.1 NC_006151.1 + 68773 0.77 0.34064
Target:  5'- uGGCGCGcGCGGCGAgGUGCGCC-GCCg -3'
miRNA:   3'- -CUGCGCaUGUCGUUgUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 68860 0.85 0.108644
Target:  5'- cGACGCGUcCAGCAGCgccgggGCGCGCCcgGCCa -3'
miRNA:   3'- -CUGCGCAuGUCGUUG------UGCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 68979 0.74 0.44157
Target:  5'- gGACGcCGgcCAGCAGCGCGCGCaCgcagGCg -3'
miRNA:   3'- -CUGC-GCauGUCGUUGUGCGCG-Ga---CGg -5'
29543 3' -56.1 NC_006151.1 + 69156 0.68 0.794366
Target:  5'- cGACGcCGUGCcgcucgcacuccucGGCGagcACGCGCGCCagggGCUc -3'
miRNA:   3'- -CUGC-GCAUG--------------UCGU---UGUGCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 69287 0.73 0.527365
Target:  5'- cGGCGCGccacCAGgGACACGgGCC-GCCg -3'
miRNA:   3'- -CUGCGCau--GUCgUUGUGCgCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 69331 0.68 0.80339
Target:  5'- gGGCGCGUcgccgcccgcgagcGCGGCGuaGCcCGCGuCCaGCCa -3'
miRNA:   3'- -CUGCGCA--------------UGUCGU--UGuGCGC-GGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 69406 0.67 0.840297
Target:  5'- gGGCGUGaGCAGgAGCucguCGCGCCaggcggcGCCg -3'
miRNA:   3'- -CUGCGCaUGUCgUUGu---GCGCGGa------CGG- -5'
29543 3' -56.1 NC_006151.1 + 69644 0.67 0.856296
Target:  5'- cGCGCGUGCGGCGccGC-CGgGUCgucgaaGCCc -3'
miRNA:   3'- cUGCGCAUGUCGU--UGuGCgCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 69678 0.68 0.778693
Target:  5'- cGCGCGU-CAGC----UGCGCCUcGCCg -3'
miRNA:   3'- cUGCGCAuGUCGuuguGCGCGGA-CGG- -5'
29543 3' -56.1 NC_006151.1 + 69782 0.66 0.878026
Target:  5'- cGCGCGUaguuggcgaacugGCGGCAcagGCGCuccagGCGCUcGCCg -3'
miRNA:   3'- cUGCGCA-------------UGUCGU---UGUG-----CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 69979 0.67 0.863991
Target:  5'- gGGCGC-UGCAGCGGCGgcaGCGUCaGCa -3'
miRNA:   3'- -CUGCGcAUGUCGUUGUg--CGCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 70090 0.67 0.848396
Target:  5'- uGCGCGUggGCGGCGAaGgGCGCgaGCg -3'
miRNA:   3'- cUGCGCA--UGUCGUUgUgCGCGgaCGg -5'
29543 3' -56.1 NC_006151.1 + 70504 0.68 0.814884
Target:  5'- gGugGCGcACAcCGACGCcacCGCCUGCUc -3'
miRNA:   3'- -CugCGCaUGUcGUUGUGc--GCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 70648 0.7 0.680234
Target:  5'- cGCGCGcgaGGCGcccguccucACGCGCGCC-GCCg -3'
miRNA:   3'- cUGCGCaugUCGU---------UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 70922 0.67 0.840297
Target:  5'- cGCGCGUGCuGGCGcuGCACGaCGgC-GCCu -3'
miRNA:   3'- cUGCGCAUG-UCGU--UGUGC-GCgGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 71762 0.68 0.769291
Target:  5'- cGCGCGUgguccugcggcaGCGGCGGCGgGgGC-UGCCg -3'
miRNA:   3'- cUGCGCA------------UGUCGUUGUgCgCGgACGG- -5'
29543 3' -56.1 NC_006151.1 + 71982 0.67 0.823534
Target:  5'- cGGCGgGgGCAGCugguaGCGCCgGCCg -3'
miRNA:   3'- -CUGCgCaUGUCGuugugCGCGGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.