miRNA display CGI


Results 61 - 80 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 128258 0.73 0.537307
Target:  5'- gGugGUGgaaGCGGCAcuGCGCGCGCagcGCCg -3'
miRNA:   3'- -CugCGCa--UGUCGU--UGUGCGCGga-CGG- -5'
29543 3' -56.1 NC_006151.1 + 128043 0.67 0.832007
Target:  5'- -cCGCGgcagcgGCGGCAGCG-GCGgCUGCg -3'
miRNA:   3'- cuGCGCa-----UGUCGUUGUgCGCgGACGg -5'
29543 3' -56.1 NC_006151.1 + 128011 0.71 0.608355
Target:  5'- -uCGCGgggcgGCGGCGACG-GCGUCUGCg -3'
miRNA:   3'- cuGCGCa----UGUCGUUGUgCGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 127927 0.66 0.871475
Target:  5'- --aGCGgggGCGGCGAgACGgGCacggGCCa -3'
miRNA:   3'- cugCGCa--UGUCGUUgUGCgCGga--CGG- -5'
29543 3' -56.1 NC_006151.1 + 127839 0.66 0.871475
Target:  5'- cGugGCGgcgucGCGGCuGCGCcggaggggGCGCCgcccGCCg -3'
miRNA:   3'- -CugCGCa----UGUCGuUGUG--------CGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 127240 0.67 0.856296
Target:  5'- cACGCGccagcucuUGCGGCGcgACGCGCGgUgGCCg -3'
miRNA:   3'- cUGCGC--------AUGUCGU--UGUGCGCgGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 126410 0.7 0.670017
Target:  5'- -cCGCGUcGgGGCGAuggcCACGCGCC-GCCg -3'
miRNA:   3'- cuGCGCA-UgUCGUU----GUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 126370 0.67 0.823534
Target:  5'- aGGCGCGcaagaagaACAGCgGGCcCGCGCUgcugGCCa -3'
miRNA:   3'- -CUGCGCa-------UGUCG-UUGuGCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 125556 0.76 0.372365
Target:  5'- cGGCGUGUACGuGCAGaacucCAUGCGCgUGCCc -3'
miRNA:   3'- -CUGCGCAUGU-CGUU-----GUGCGCGgACGG- -5'
29543 3' -56.1 NC_006151.1 + 125313 0.66 0.899193
Target:  5'- cACGgGcuCGGCGGaguuuGCGCGCCUGCa -3'
miRNA:   3'- cUGCgCauGUCGUUg----UGCGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 125053 0.73 0.497974
Target:  5'- cGGCGCuacaACAGCAcGCACGUGCUgGCCg -3'
miRNA:   3'- -CUGCGca--UGUCGU-UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 124988 0.66 0.885787
Target:  5'- aGCGCGUGCaccugGGCGAC-UGCGuCCU-CCg -3'
miRNA:   3'- cUGCGCAUG-----UCGUUGuGCGC-GGAcGG- -5'
29543 3' -56.1 NC_006151.1 + 124855 0.69 0.73054
Target:  5'- cGCGUGUGCAGCcuggccaaGugGCGCGag-GCCg -3'
miRNA:   3'- cUGCGCAUGUCG--------UugUGCGCggaCGG- -5'
29543 3' -56.1 NC_006151.1 + 124063 0.73 0.527365
Target:  5'- gGACGCGcggACGGCcgUGCGCGCg-GCCg -3'
miRNA:   3'- -CUGCGCa--UGUCGuuGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 123910 0.73 0.488339
Target:  5'- cGGCGCG-GCGGCcguGACGCGgGCC-GCCu -3'
miRNA:   3'- -CUGCGCaUGUCG---UUGUGCgCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 123871 0.68 0.778693
Target:  5'- aGCGC-UGCuGCuGCugGCGCUcGCCg -3'
miRNA:   3'- cUGCGcAUGuCGuUGugCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 123184 0.77 0.310918
Target:  5'- aACGUGUACGGCGACGCGCuG-CUGCa -3'
miRNA:   3'- cUGCGCAUGUCGUUGUGCG-CgGACGg -5'
29543 3' -56.1 NC_006151.1 + 123143 0.68 0.79163
Target:  5'- uGCGCGaGCAGCGGCGCGagcuggagaagacCCUGCg -3'
miRNA:   3'- cUGCGCaUGUCGUUGUGCgc-----------GGACGg -5'
29543 3' -56.1 NC_006151.1 + 123059 0.67 0.840297
Target:  5'- cGGCGC-UGC-GCGACGCcgagcgccggcgGCGCCUGUa -3'
miRNA:   3'- -CUGCGcAUGuCGUUGUG------------CGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 122983 0.69 0.719617
Target:  5'- gGGgGCGU-CGGCGACgaagacgggcccgGCGCGCCcccGCCg -3'
miRNA:   3'- -CUgCGCAuGUCGUUG-------------UGCGCGGa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.