miRNA display CGI


Results 81 - 100 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 122934 0.68 0.814884
Target:  5'- cGACGCGgacgccgACGGCGGCGCcgcgggggGCGCggacGCCg -3'
miRNA:   3'- -CUGCGCa------UGUCGUUGUG--------CGCGga--CGG- -5'
29543 3' -56.1 NC_006151.1 + 122783 0.66 0.899193
Target:  5'- -uCGUGgGCGGCuGCGCG-GCCUcGCCc -3'
miRNA:   3'- cuGCGCaUGUCGuUGUGCgCGGA-CGG- -5'
29543 3' -56.1 NC_006151.1 + 122663 0.67 0.823534
Target:  5'- cGGCGCGaGCgccgcgccgAGguGCGCGCGgCgGCCg -3'
miRNA:   3'- -CUGCGCaUG---------UCguUGUGCGCgGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 122539 0.68 0.814884
Target:  5'- cGACGUGUucCGGCccgccuCGCgGCGCCUGUa -3'
miRNA:   3'- -CUGCGCAu-GUCGuu----GUG-CGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 122451 0.78 0.296813
Target:  5'- aGGCgGCGUccacgGCGGCGGCGgGCGCCgagGCCg -3'
miRNA:   3'- -CUG-CGCA-----UGUCGUUGUgCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 122396 0.72 0.567495
Target:  5'- gGGCGCGcGCuGGCGGCGCuCGCC-GCCg -3'
miRNA:   3'- -CUGCGCaUG-UCGUUGUGcGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 121996 0.72 0.587861
Target:  5'- cGGCGCGUGCcGCuuccACGCGCGCgUcGCg -3'
miRNA:   3'- -CUGCGCAUGuCGu---UGUGCGCGgA-CGg -5'
29543 3' -56.1 NC_006151.1 + 121806 0.68 0.797089
Target:  5'- cACGCGUcaAGCugaACGCGCUgaugUGCCg -3'
miRNA:   3'- cUGCGCAugUCGuugUGCGCGG----ACGG- -5'
29543 3' -56.1 NC_006151.1 + 121608 0.66 0.885787
Target:  5'- cGAcCGCGUuugACAGaCAcacACGCGCGUCccgugGCCu -3'
miRNA:   3'- -CU-GCGCA---UGUC-GU---UGUGCGCGGa----CGG- -5'
29543 3' -56.1 NC_006151.1 + 121412 0.73 0.507693
Target:  5'- cGGCGCGgGCGGgGACGucgcggggcuCGCGCCgGCCu -3'
miRNA:   3'- -CUGCGCaUGUCgUUGU----------GCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 121290 0.67 0.826945
Target:  5'- gGGCGCGUggccgACcGCGACGgGCGCUggagcguggaggcgGCCg -3'
miRNA:   3'- -CUGCGCA-----UGuCGUUGUgCGCGGa-------------CGG- -5'
29543 3' -56.1 NC_006151.1 + 120788 0.66 0.899193
Target:  5'- gGACGCGgccgAC-GCGGaGCGCGCC-GCg -3'
miRNA:   3'- -CUGCGCa---UGuCGUUgUGCGCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 120503 0.68 0.775885
Target:  5'- gGACGC-UGCuGCAGCgcaaccagcugccgGCGCGgCUGCUg -3'
miRNA:   3'- -CUGCGcAUGuCGUUG--------------UGCGCgGACGG- -5'
29543 3' -56.1 NC_006151.1 + 120311 0.66 0.884396
Target:  5'- cGACGgGcucggGCAGCcucucggacgccGCGCGCGCCcgcgugGCCg -3'
miRNA:   3'- -CUGCgCa----UGUCGu-----------UGUGCGCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 119636 0.67 0.856296
Target:  5'- aGCGCcUACAGCGACugcgACGUGCUcgGCa -3'
miRNA:   3'- cUGCGcAUGUCGUUG----UGCGCGGa-CGg -5'
29543 3' -56.1 NC_006151.1 + 119377 0.69 0.750125
Target:  5'- --gGCGUGCGGCuucuGCccgcagcugcugGCGCGCgUGCUg -3'
miRNA:   3'- cugCGCAUGUCGu---UG------------UGCGCGgACGG- -5'
29543 3' -56.1 NC_006151.1 + 119297 0.72 0.598095
Target:  5'- gGGCGCGUGCuGCugcACACG-GCCUcgcaGCCc -3'
miRNA:   3'- -CUGCGCAUGuCGu--UGUGCgCGGA----CGG- -5'
29543 3' -56.1 NC_006151.1 + 119188 0.67 0.832007
Target:  5'- cGACGCGggcGCcGcCGACGCGCGCaaggagggcGCCg -3'
miRNA:   3'- -CUGCGCa--UGuC-GUUGUGCGCGga-------CGG- -5'
29543 3' -56.1 NC_006151.1 + 119104 0.75 0.406042
Target:  5'- cGGCGCGUACgugAGCcGCGCG-GCCgGCCu -3'
miRNA:   3'- -CUGCGCAUG---UCGuUGUGCgCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 119038 0.68 0.806066
Target:  5'- gGGCGCcaaggACGGCGGCGcCGCGgCC-GCCu -3'
miRNA:   3'- -CUGCGca---UGUCGUUGU-GCGC-GGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.