miRNA display CGI


Results 101 - 120 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 118883 0.79 0.251369
Target:  5'- cGGCGCG-GCGGCGACGCGgcCGCCggcgGCCu -3'
miRNA:   3'- -CUGCGCaUGUCGUUGUGC--GCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 118783 0.72 0.567495
Target:  5'- gGACGCGgugGCGcGCGGCGCGgCGCaccugGCCu -3'
miRNA:   3'- -CUGCGCa--UGU-CGUUGUGC-GCGga---CGG- -5'
29543 3' -56.1 NC_006151.1 + 118439 0.66 0.871475
Target:  5'- gGAgGUGUGCGcGCGGCuCG-GCCUGgCCg -3'
miRNA:   3'- -CUgCGCAUGU-CGUUGuGCgCGGAC-GG- -5'
29543 3' -56.1 NC_006151.1 + 118354 0.76 0.356254
Target:  5'- cGCGCGccUGCgaGGCGGCGCGCGCCcGCUu -3'
miRNA:   3'- cUGCGC--AUG--UCGUUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 118316 0.77 0.310918
Target:  5'- gGACuGCGUGCccccgAGCAGCGcCGCGCCcGCCc -3'
miRNA:   3'- -CUG-CGCAUG-----UCGUUGU-GCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 118148 0.66 0.885787
Target:  5'- cGACGCcgcgGCGGUGGCgccgcugguGCGCGgCCUGaCCg -3'
miRNA:   3'- -CUGCGca--UGUCGUUG---------UGCGC-GGAC-GG- -5'
29543 3' -56.1 NC_006151.1 + 118077 0.66 0.876585
Target:  5'- uACGUGUACgugacgccgaucgaGGCGcuGCGcCGCGaCCUGCUg -3'
miRNA:   3'- cUGCGCAUG--------------UCGU--UGU-GCGC-GGACGG- -5'
29543 3' -56.1 NC_006151.1 + 117705 0.68 0.769291
Target:  5'- aGGCGCGU-CAcGUAGC-UGC-CCUGCCg -3'
miRNA:   3'- -CUGCGCAuGU-CGUUGuGCGcGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 117380 0.77 0.34064
Target:  5'- cACGUGcACGGC--CACGCGCUUGCCg -3'
miRNA:   3'- cUGCGCaUGUCGuuGUGCGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 117273 0.72 0.577658
Target:  5'- cGCGCGgccgccgccgACAGC-GCGCGCGCgaGCUg -3'
miRNA:   3'- cUGCGCa---------UGUCGuUGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 116991 0.68 0.806066
Target:  5'- aGGCGCugGUgccGCAGCAcCACGCGCUcccccgcggGCCc -3'
miRNA:   3'- -CUGCG--CA---UGUCGUuGUGCGCGGa--------CGG- -5'
29543 3' -56.1 NC_006151.1 + 116204 0.67 0.832007
Target:  5'- uGGCGCGcGCgAGCGugAuguuggcgagcCGCGCCacgGCCg -3'
miRNA:   3'- -CUGCGCaUG-UCGUugU-----------GCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 116114 0.7 0.700541
Target:  5'- uGGCGCGgcgcuugucggGCAGCAcgaaGC-CGCGCgaGCCc -3'
miRNA:   3'- -CUGCGCa----------UGUCGU----UGuGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 115605 0.68 0.797089
Target:  5'- cGCGCGU--GGCccaGCGCGUCUGCa -3'
miRNA:   3'- cUGCGCAugUCGuugUGCGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 115359 0.67 0.859399
Target:  5'- uGACGCcgauGUACuucuucuucgugaugAGCAGCAgGCGCCggaagGUCu -3'
miRNA:   3'- -CUGCG----CAUG---------------UCGUUGUgCGCGGa----CGG- -5'
29543 3' -56.1 NC_006151.1 + 115200 0.68 0.814884
Target:  5'- aGCGCGccGCGGgcGCGCGCGCgaucguggccgCUGCCg -3'
miRNA:   3'- cUGCGCa-UGUCguUGUGCGCG-----------GACGG- -5'
29543 3' -56.1 NC_006151.1 + 115116 0.77 0.310918
Target:  5'- cGGCGCcgcCGGCGACGCGCGCgUGCg -3'
miRNA:   3'- -CUGCGcauGUCGUUGUGCGCGgACGg -5'
29543 3' -56.1 NC_006151.1 + 115043 0.66 0.899193
Target:  5'- aGGCGCGUGuuGCugUACGCGuCCgggggGCg -3'
miRNA:   3'- -CUGCGCAUguCGuuGUGCGC-GGa----CGg -5'
29543 3' -56.1 NC_006151.1 + 114313 0.67 0.823534
Target:  5'- uACGUGcUGC-GCGACGgGgGCCUGCg -3'
miRNA:   3'- cUGCGC-AUGuCGUUGUgCgCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 114148 0.67 0.848396
Target:  5'- -cCGCGgcucgggcGCAGCGAC-CGCGCg-GCCc -3'
miRNA:   3'- cuGCGCa-------UGUCGUUGuGCGCGgaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.