miRNA display CGI


Results 121 - 140 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 113918 0.7 0.700541
Target:  5'- uGACGCGcGCGGCccgcgaucGCuACGCGCCcuacuuUGCCu -3'
miRNA:   3'- -CUGCGCaUGUCGu-------UG-UGCGCGG------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 113652 0.68 0.797089
Target:  5'- cGACGCGcUGC-GCAAgGCGCagaucGCC-GCCg -3'
miRNA:   3'- -CUGCGC-AUGuCGUUgUGCG-----CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 113526 0.7 0.700541
Target:  5'- gGACGCGcGCuuccuGGCGcugAUGCGCGCCgcggGCCc -3'
miRNA:   3'- -CUGCGCaUG-----UCGU---UGUGCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 113412 0.66 0.885787
Target:  5'- cACGCGcGC-GCAcugGCugGCGCUgcGCCg -3'
miRNA:   3'- cUGCGCaUGuCGU---UGugCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 113360 0.66 0.885787
Target:  5'- uGCGCG-GCcGCAaccGCACGCacggcgaguGCCUGCUc -3'
miRNA:   3'- cUGCGCaUGuCGU---UGUGCG---------CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 113070 0.76 0.380605
Target:  5'- cGACGCGUACG--AGCGCGCGgCCgucGCCg -3'
miRNA:   3'- -CUGCGCAUGUcgUUGUGCGC-GGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 113028 0.66 0.871475
Target:  5'- cGACGCGUGCgccGGguGCuGCGCGgCgGCg -3'
miRNA:   3'- -CUGCGCAUG---UCguUG-UGCGCgGaCGg -5'
29543 3' -56.1 NC_006151.1 + 112949 0.72 0.602196
Target:  5'- cGACGCGcGCgauguuuuucaccguGGCGgacgcGCGCGCGCC-GCCg -3'
miRNA:   3'- -CUGCGCaUG---------------UCGU-----UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 112854 0.69 0.750125
Target:  5'- cGugGaCGUGCAGCGGCACuuuuuCCUGCa -3'
miRNA:   3'- -CugC-GCAUGUCGUUGUGcgc--GGACGg -5'
29543 3' -56.1 NC_006151.1 + 112810 0.73 0.527365
Target:  5'- cGCGCGUcGCuGCA--GCGCGCCUucGCCa -3'
miRNA:   3'- cUGCGCA-UGuCGUugUGCGCGGA--CGG- -5'
29543 3' -56.1 NC_006151.1 + 112009 0.68 0.773067
Target:  5'- cGACGCGgcgGCGGCGauuuucccggcgggaGCugGgGCCgGCg -3'
miRNA:   3'- -CUGCGCa--UGUCGU---------------UGugCgCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 111548 0.66 0.899193
Target:  5'- uGGCGC--GCAGCGGcCGCGUGUCcacGCCc -3'
miRNA:   3'- -CUGCGcaUGUCGUU-GUGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 111443 0.68 0.769291
Target:  5'- cGGCGCGgucCAGgaGGCGCuGCGUCUGCg -3'
miRNA:   3'- -CUGCGCau-GUCg-UUGUG-CGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 111252 0.66 0.892606
Target:  5'- --gGUGUGCAGCAGCGaggccgggaacCGCGCggGCg -3'
miRNA:   3'- cugCGCAUGUCGUUGU-----------GCGCGgaCGg -5'
29543 3' -56.1 NC_006151.1 + 111128 0.66 0.871475
Target:  5'- cGCGCGUcuguGCGcGCccccGCGCGCGCg-GCCg -3'
miRNA:   3'- cUGCGCA----UGU-CGu---UGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 110911 0.66 0.891934
Target:  5'- uGCGCGUGCcGCAGguuCACGaggGCCagggaggUGCCg -3'
miRNA:   3'- cUGCGCAUGuCGUU---GUGCg--CGG-------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 110183 0.73 0.527365
Target:  5'- -cCGCGUGCcGCcugauAGCGCGcCGCCUGCg -3'
miRNA:   3'- cuGCGCAUGuCG-----UUGUGC-GCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 109906 0.71 0.628921
Target:  5'- -cCGCGgcgGCAGCAGCAgagaccucCGcCGCCgGCCu -3'
miRNA:   3'- cuGCGCa--UGUCGUUGU--------GC-GCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 107036 0.66 0.878742
Target:  5'- cGGCGCGgccccuggcCGGCgAGC-CG-GCCUGCCu -3'
miRNA:   3'- -CUGCGCau-------GUCG-UUGuGCgCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 106848 0.66 0.878742
Target:  5'- gGACGUGUACucGCccGGCuCGgGCCUGaCCc -3'
miRNA:   3'- -CUGCGCAUGu-CG--UUGuGCgCGGAC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.