miRNA display CGI


Results 81 - 100 of 456 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 25111 0.66 0.885093
Target:  5'- -cUGCGUGCgAGCGcugggcguggACGCGCGacaacccCCUGCUg -3'
miRNA:   3'- cuGCGCAUG-UCGU----------UGUGCGC-------GGACGG- -5'
29543 3' -56.1 NC_006151.1 + 87252 0.66 0.884396
Target:  5'- gGGCGCuguacccgccgauGUACgccccccagccggGGCuGCACGCGCC-GCCc -3'
miRNA:   3'- -CUGCG-------------CAUG-------------UCGuUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 120311 0.66 0.884396
Target:  5'- cGACGgGcucggGCAGCcucucggacgccGCGCGCGCCcgcgugGCCg -3'
miRNA:   3'- -CUGCgCa----UGUCGu-----------UGUGCGCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 81521 0.66 0.883697
Target:  5'- -cCGCGUgagcucggcggccGCGGCGGCGCGCuCCgcggugcacaugGCCg -3'
miRNA:   3'- cuGCGCA-------------UGUCGUUGUGCGcGGa-----------CGG- -5'
29543 3' -56.1 NC_006151.1 + 107036 0.66 0.878742
Target:  5'- cGGCGCGgccccuggcCGGCgAGC-CG-GCCUGCCu -3'
miRNA:   3'- -CUGCGCau-------GUCG-UUGuGCgCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 95312 0.66 0.878742
Target:  5'- cGGCGCaGcGCGGCAaagucgaagGCGC-CGCCcGCCa -3'
miRNA:   3'- -CUGCG-CaUGUCGU---------UGUGcGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 20141 0.66 0.878742
Target:  5'- gGGCGCcgcgGgGGCGGCGCGUggaccGCCggGCCg -3'
miRNA:   3'- -CUGCGca--UgUCGUUGUGCG-----CGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 104406 0.66 0.885787
Target:  5'- cGGCgGCGUGCuGGCc-CGCGCcGCC-GCCg -3'
miRNA:   3'- -CUG-CGCAUG-UCGuuGUGCG-CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 104778 0.66 0.885787
Target:  5'- --gGCGUACgcggAGCcauGCGCGCGCUcgUGCg -3'
miRNA:   3'- cugCGCAUG----UCGu--UGUGCGCGG--ACGg -5'
29543 3' -56.1 NC_006151.1 + 113360 0.66 0.885787
Target:  5'- uGCGCG-GCcGCAaccGCACGCacggcgaguGCCUGCUc -3'
miRNA:   3'- cUGCGCaUGuCGU---UGUGCG---------CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 49833 0.66 0.892606
Target:  5'- gGACGaCG-ACGGCGGCgGCGgGCCcGCg -3'
miRNA:   3'- -CUGC-GCaUGUCGUUG-UGCgCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 111252 0.66 0.892606
Target:  5'- --gGUGUGCAGCAGCGaggccgggaacCGCGCggGCg -3'
miRNA:   3'- cugCGCAUGUCGUUGU-----------GCGCGgaCGg -5'
29543 3' -56.1 NC_006151.1 + 47386 0.66 0.892606
Target:  5'- aGugGCacucagACAGCAcuuuggcCugGCGCCcgGCCa -3'
miRNA:   3'- -CugCGca----UGUCGUu------GugCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 110911 0.66 0.891934
Target:  5'- uGCGCGUGCcGCAGguuCACGaggGCCagggaggUGCCg -3'
miRNA:   3'- cUGCGCAUGuCGUU---GUGCg--CGG-------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 55880 0.66 0.885787
Target:  5'- cGGCGCuGUcGCGGCgGACGUGCGCCggGCg -3'
miRNA:   3'- -CUGCG-CA-UGUCG-UUGUGCGCGGa-CGg -5'
29543 3' -56.1 NC_006151.1 + 39338 0.66 0.885787
Target:  5'- -uCGCGgcuCGGCGcgGCGCgGCGCCgGCUc -3'
miRNA:   3'- cuGCGCau-GUCGU--UGUG-CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 124988 0.66 0.885787
Target:  5'- aGCGCGUGCaccugGGCGAC-UGCGuCCU-CCg -3'
miRNA:   3'- cUGCGCAUG-----UCGUUGuGCGC-GGAcGG- -5'
29543 3' -56.1 NC_006151.1 + 121608 0.66 0.885787
Target:  5'- cGAcCGCGUuugACAGaCAcacACGCGCGUCccgugGCCu -3'
miRNA:   3'- -CU-GCGCA---UGUC-GU---UGUGCGCGGa----CGG- -5'
29543 3' -56.1 NC_006151.1 + 118148 0.66 0.885787
Target:  5'- cGACGCcgcgGCGGUGGCgccgcugguGCGCGgCCUGaCCg -3'
miRNA:   3'- -CUGCGca--UGUCGUUG---------UGCGC-GGAC-GG- -5'
29543 3' -56.1 NC_006151.1 + 113412 0.66 0.885787
Target:  5'- cACGCGcGC-GCAcugGCugGCGCUgcGCCg -3'
miRNA:   3'- cUGCGCaUGuCGU---UGugCGCGGa-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.