miRNA display CGI


Results 101 - 120 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 37446 0.66 0.878742
Target:  5'- gGACGaCGUccgccaggccGCGGCccgcuAC-CGCGCCgcgGCCg -3'
miRNA:   3'- -CUGC-GCA----------UGUCGu----UGuGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 102810 0.66 0.878742
Target:  5'- uGCGCGgcgcGCAGU-ACA-GCGCCaagGCCa -3'
miRNA:   3'- cUGCGCa---UGUCGuUGUgCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 69782 0.66 0.878026
Target:  5'- cGCGCGUaguuggcgaacugGCGGCAcagGCGCuccagGCGCUcGCCg -3'
miRNA:   3'- cUGCGCA-------------UGUCGU---UGUG-----CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 118077 0.66 0.876585
Target:  5'- uACGUGUACgugacgccgaucgaGGCGcuGCGcCGCGaCCUGCUg -3'
miRNA:   3'- cUGCGCAUG--------------UCGU--UGU-GCGC-GGACGG- -5'
29543 3' -56.1 NC_006151.1 + 76667 0.66 0.875862
Target:  5'- cGCGUGUGCgcggucgcuggggAGCAggggggagaguggcGCggGCGCGCCgcgGCCg -3'
miRNA:   3'- cUGCGCAUG-------------UCGU--------------UG--UGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 81521 0.66 0.883697
Target:  5'- -cCGCGUgagcucggcggccGCGGCGGCGCGCuCCgcggugcacaugGCCg -3'
miRNA:   3'- cuGCGCA-------------UGUCGUUGUGCGcGGa-----------CGG- -5'
29543 3' -56.1 NC_006151.1 + 120311 0.66 0.884396
Target:  5'- cGACGgGcucggGCAGCcucucggacgccGCGCGCGCCcgcgugGCCg -3'
miRNA:   3'- -CUGCgCa----UGUCGu-----------UGUGCGCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 39338 0.66 0.885787
Target:  5'- -uCGCGgcuCGGCGcgGCGCgGCGCCgGCUc -3'
miRNA:   3'- cuGCGCau-GUCGU--UGUG-CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 124988 0.66 0.885787
Target:  5'- aGCGCGUGCaccugGGCGAC-UGCGuCCU-CCg -3'
miRNA:   3'- cUGCGCAUG-----UCGUUGuGCGC-GGAcGG- -5'
29543 3' -56.1 NC_006151.1 + 121608 0.66 0.885787
Target:  5'- cGAcCGCGUuugACAGaCAcacACGCGCGUCccgugGCCu -3'
miRNA:   3'- -CU-GCGCA---UGUC-GU---UGUGCGCGGa----CGG- -5'
29543 3' -56.1 NC_006151.1 + 118148 0.66 0.885787
Target:  5'- cGACGCcgcgGCGGUGGCgccgcugguGCGCGgCCUGaCCg -3'
miRNA:   3'- -CUGCGca--UGUCGUUG---------UGCGC-GGAC-GG- -5'
29543 3' -56.1 NC_006151.1 + 113412 0.66 0.885787
Target:  5'- cACGCGcGC-GCAcugGCugGCGCUgcGCCg -3'
miRNA:   3'- cUGCGCaUGuCGU---UGugCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 113360 0.66 0.885787
Target:  5'- uGCGCG-GCcGCAaccGCACGCacggcgaguGCCUGCUc -3'
miRNA:   3'- cUGCGCaUGuCGU---UGUGCG---------CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 104778 0.66 0.885787
Target:  5'- --gGCGUACgcggAGCcauGCGCGCGCUcgUGCg -3'
miRNA:   3'- cugCGCAUG----UCGu--UGUGCGCGG--ACGg -5'
29543 3' -56.1 NC_006151.1 + 104406 0.66 0.885787
Target:  5'- cGGCgGCGUGCuGGCc-CGCGCcGCC-GCCg -3'
miRNA:   3'- -CUG-CGCAUG-UCGuuGUGCG-CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 46606 0.66 0.885787
Target:  5'- aGGCGCGaGCAGaGACGgacccgGUGCCUGCg -3'
miRNA:   3'- -CUGCGCaUGUCgUUGUg-----CGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 133184 0.66 0.885093
Target:  5'- cACGCGUcccACGGCcGCGCagaagauGCGCUUGUUg -3'
miRNA:   3'- cUGCGCA---UGUCGuUGUG-------CGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 92217 0.66 0.885093
Target:  5'- -cCGCGcUGgAGCAcgaugcuGCACGCGCC-GCg -3'
miRNA:   3'- cuGCGC-AUgUCGU-------UGUGCGCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 25111 0.66 0.885093
Target:  5'- -cUGCGUGCgAGCGcugggcguggACGCGCGacaacccCCUGCUg -3'
miRNA:   3'- cuGCGCAUG-UCGU----------UGUGCGC-------GGACGG- -5'
29543 3' -56.1 NC_006151.1 + 87252 0.66 0.884396
Target:  5'- gGGCGCuguacccgccgauGUACgccccccagccggGGCuGCACGCGCC-GCCc -3'
miRNA:   3'- -CUGCG-------------CAUG-------------UCGuUGUGCGCGGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.