Results 101 - 120 of 456 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29543 | 3' | -56.1 | NC_006151.1 | + | 37446 | 0.66 | 0.878742 |
Target: 5'- gGACGaCGUccgccaggccGCGGCccgcuAC-CGCGCCgcgGCCg -3' miRNA: 3'- -CUGC-GCA----------UGUCGu----UGuGCGCGGa--CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 102810 | 0.66 | 0.878742 |
Target: 5'- uGCGCGgcgcGCAGU-ACA-GCGCCaagGCCa -3' miRNA: 3'- cUGCGCa---UGUCGuUGUgCGCGGa--CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 69782 | 0.66 | 0.878026 |
Target: 5'- cGCGCGUaguuggcgaacugGCGGCAcagGCGCuccagGCGCUcGCCg -3' miRNA: 3'- cUGCGCA-------------UGUCGU---UGUG-----CGCGGaCGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 118077 | 0.66 | 0.876585 |
Target: 5'- uACGUGUACgugacgccgaucgaGGCGcuGCGcCGCGaCCUGCUg -3' miRNA: 3'- cUGCGCAUG--------------UCGU--UGU-GCGC-GGACGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 76667 | 0.66 | 0.875862 |
Target: 5'- cGCGUGUGCgcggucgcuggggAGCAggggggagaguggcGCggGCGCGCCgcgGCCg -3' miRNA: 3'- cUGCGCAUG-------------UCGU--------------UG--UGCGCGGa--CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 81521 | 0.66 | 0.883697 |
Target: 5'- -cCGCGUgagcucggcggccGCGGCGGCGCGCuCCgcggugcacaugGCCg -3' miRNA: 3'- cuGCGCA-------------UGUCGUUGUGCGcGGa-----------CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 120311 | 0.66 | 0.884396 |
Target: 5'- cGACGgGcucggGCAGCcucucggacgccGCGCGCGCCcgcgugGCCg -3' miRNA: 3'- -CUGCgCa----UGUCGu-----------UGUGCGCGGa-----CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 39338 | 0.66 | 0.885787 |
Target: 5'- -uCGCGgcuCGGCGcgGCGCgGCGCCgGCUc -3' miRNA: 3'- cuGCGCau-GUCGU--UGUG-CGCGGaCGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 124988 | 0.66 | 0.885787 |
Target: 5'- aGCGCGUGCaccugGGCGAC-UGCGuCCU-CCg -3' miRNA: 3'- cUGCGCAUG-----UCGUUGuGCGC-GGAcGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 121608 | 0.66 | 0.885787 |
Target: 5'- cGAcCGCGUuugACAGaCAcacACGCGCGUCccgugGCCu -3' miRNA: 3'- -CU-GCGCA---UGUC-GU---UGUGCGCGGa----CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 118148 | 0.66 | 0.885787 |
Target: 5'- cGACGCcgcgGCGGUGGCgccgcugguGCGCGgCCUGaCCg -3' miRNA: 3'- -CUGCGca--UGUCGUUG---------UGCGC-GGAC-GG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 113412 | 0.66 | 0.885787 |
Target: 5'- cACGCGcGC-GCAcugGCugGCGCUgcGCCg -3' miRNA: 3'- cUGCGCaUGuCGU---UGugCGCGGa-CGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 113360 | 0.66 | 0.885787 |
Target: 5'- uGCGCG-GCcGCAaccGCACGCacggcgaguGCCUGCUc -3' miRNA: 3'- cUGCGCaUGuCGU---UGUGCG---------CGGACGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 104778 | 0.66 | 0.885787 |
Target: 5'- --gGCGUACgcggAGCcauGCGCGCGCUcgUGCg -3' miRNA: 3'- cugCGCAUG----UCGu--UGUGCGCGG--ACGg -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 104406 | 0.66 | 0.885787 |
Target: 5'- cGGCgGCGUGCuGGCc-CGCGCcGCC-GCCg -3' miRNA: 3'- -CUG-CGCAUG-UCGuuGUGCG-CGGaCGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 46606 | 0.66 | 0.885787 |
Target: 5'- aGGCGCGaGCAGaGACGgacccgGUGCCUGCg -3' miRNA: 3'- -CUGCGCaUGUCgUUGUg-----CGCGGACGg -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 133184 | 0.66 | 0.885093 |
Target: 5'- cACGCGUcccACGGCcGCGCagaagauGCGCUUGUUg -3' miRNA: 3'- cUGCGCA---UGUCGuUGUG-------CGCGGACGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 92217 | 0.66 | 0.885093 |
Target: 5'- -cCGCGcUGgAGCAcgaugcuGCACGCGCC-GCg -3' miRNA: 3'- cuGCGC-AUgUCGU-------UGUGCGCGGaCGg -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 25111 | 0.66 | 0.885093 |
Target: 5'- -cUGCGUGCgAGCGcugggcguggACGCGCGacaacccCCUGCUg -3' miRNA: 3'- cuGCGCAUG-UCGU----------UGUGCGC-------GGACGG- -5' |
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29543 | 3' | -56.1 | NC_006151.1 | + | 87252 | 0.66 | 0.884396 |
Target: 5'- gGGCGCuguacccgccgauGUACgccccccagccggGGCuGCACGCGCC-GCCc -3' miRNA: 3'- -CUGCG-------------CAUG-------------UCGuUGUGCGCGGaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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