miRNA display CGI


Results 21 - 40 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 47386 0.66 0.892606
Target:  5'- aGugGCacucagACAGCAcuuuggcCugGCGCCcgGCCa -3'
miRNA:   3'- -CugCGca----UGUCGUu------GugCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 111252 0.66 0.892606
Target:  5'- --gGUGUGCAGCAGCGaggccgggaacCGCGCggGCg -3'
miRNA:   3'- cugCGCAUGUCGUUGU-----------GCGCGgaCGg -5'
29543 3' -56.1 NC_006151.1 + 49833 0.66 0.892606
Target:  5'- gGACGaCG-ACGGCGGCgGCGgGCCcGCg -3'
miRNA:   3'- -CUGC-GCaUGUCGUUG-UGCgCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 75435 0.66 0.892606
Target:  5'- gGGCGCGaagcugcCGGCGugGCGCGCgUagcggucggcgGCCg -3'
miRNA:   3'- -CUGCGCau-----GUCGUugUGCGCGgA-----------CGG- -5'
29543 3' -56.1 NC_006151.1 + 82920 0.66 0.892606
Target:  5'- cGACGUGaa-GGCGcACACGCa-CUGCCg -3'
miRNA:   3'- -CUGCGCaugUCGU-UGUGCGcgGACGG- -5'
29543 3' -56.1 NC_006151.1 + 93579 0.66 0.892606
Target:  5'- gGGCGCGccaaAgAGCgGGCuCGCGCCgaugGCCu -3'
miRNA:   3'- -CUGCGCa---UgUCG-UUGuGCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 96069 0.66 0.892606
Target:  5'- --gGCGaGCgAGCcGCGCGCGCg-GCCg -3'
miRNA:   3'- cugCGCaUG-UCGuUGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 76342 0.66 0.892606
Target:  5'- -cCGgGUGCGGCccguCGCGCGCgaucaucggCUGCUg -3'
miRNA:   3'- cuGCgCAUGUCGuu--GUGCGCG---------GACGG- -5'
29543 3' -56.1 NC_006151.1 + 87165 0.66 0.892606
Target:  5'- cGACGcCGUACuacGCGccCGCgGCGCC-GCCg -3'
miRNA:   3'- -CUGC-GCAUGu--CGUu-GUG-CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 110911 0.66 0.891934
Target:  5'- uGCGCGUGCcGCAGguuCACGaggGCCagggaggUGCCg -3'
miRNA:   3'- cUGCGCAUGuCGUU---GUGCg--CGG-------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 113360 0.66 0.885787
Target:  5'- uGCGCG-GCcGCAaccGCACGCacggcgaguGCCUGCUc -3'
miRNA:   3'- cUGCGCaUGuCGU---UGUGCG---------CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 104778 0.66 0.885787
Target:  5'- --gGCGUACgcggAGCcauGCGCGCGCUcgUGCg -3'
miRNA:   3'- cugCGCAUG----UCGu--UGUGCGCGG--ACGg -5'
29543 3' -56.1 NC_006151.1 + 104406 0.66 0.885787
Target:  5'- cGGCgGCGUGCuGGCc-CGCGCcGCC-GCCg -3'
miRNA:   3'- -CUG-CGCAUG-UCGuuGUGCG-CGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 46606 0.66 0.885787
Target:  5'- aGGCGCGaGCAGaGACGgacccgGUGCCUGCg -3'
miRNA:   3'- -CUGCGCaUGUCgUUGUg-----CGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 113412 0.66 0.885787
Target:  5'- cACGCGcGC-GCAcugGCugGCGCUgcGCCg -3'
miRNA:   3'- cUGCGCaUGuCGU---UGugCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 118148 0.66 0.885787
Target:  5'- cGACGCcgcgGCGGUGGCgccgcugguGCGCGgCCUGaCCg -3'
miRNA:   3'- -CUGCGca--UGUCGUUG---------UGCGC-GGAC-GG- -5'
29543 3' -56.1 NC_006151.1 + 121608 0.66 0.885787
Target:  5'- cGAcCGCGUuugACAGaCAcacACGCGCGUCccgugGCCu -3'
miRNA:   3'- -CU-GCGCA---UGUC-GU---UGUGCGCGGa----CGG- -5'
29543 3' -56.1 NC_006151.1 + 124988 0.66 0.885787
Target:  5'- aGCGCGUGCaccugGGCGAC-UGCGuCCU-CCg -3'
miRNA:   3'- cUGCGCAUG-----UCGUUGuGCGC-GGAcGG- -5'
29543 3' -56.1 NC_006151.1 + 39338 0.66 0.885787
Target:  5'- -uCGCGgcuCGGCGcgGCGCgGCGCCgGCUc -3'
miRNA:   3'- cuGCGCau-GUCGU--UGUG-CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 55880 0.66 0.885787
Target:  5'- cGGCGCuGUcGCGGCgGACGUGCGCCggGCg -3'
miRNA:   3'- -CUGCG-CA-UGUCG-UUGUGCGCGGa-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.