Results 61 - 80 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29543 | 5' | -54.5 | NC_006151.1 | + | 131238 | 0.67 | 0.914163 |
Target: 5'- gCCGUCggccGCCACGuacAGCUccccgucGGaCCAcGCGCc -3' miRNA: 3'- -GGCAGa---UGGUGU---UCGA-------CC-GGUaCGCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 49474 | 0.67 | 0.913569 |
Target: 5'- cCCGUCga-CugGAGCguggacugagucGGgCGUGCGCg -3' miRNA: 3'- -GGCAGaugGugUUCGa-----------CCgGUACGCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 4185 | 0.67 | 0.913569 |
Target: 5'- gCCGUC-ACCuccucgagGCAGGCgggcccgagggcGGCCGggGCGCg -3' miRNA: 3'- -GGCAGaUGG--------UGUUCGa-----------CCGGUa-CGCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 73898 | 0.67 | 0.912372 |
Target: 5'- gCGUCguugggcugguagGCCAUcauGAGCaGGCCGUGgUGCa -3' miRNA: 3'- gGCAGa------------UGGUG---UUCGaCCGGUAC-GCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 131101 | 0.67 | 0.908725 |
Target: 5'- aCGUCgGCgGgGGGCccGGCCGcgGCGCg -3' miRNA: 3'- gGCAGaUGgUgUUCGa-CCGGUa-CGCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 119112 | 0.67 | 0.908725 |
Target: 5'- aCGUgaGCCGCGcGGCcGGCCucguggggGCGCu -3' miRNA: 3'- gGCAgaUGGUGU-UCGaCCGGua------CGCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 78585 | 0.67 | 0.914755 |
Target: 5'- aCGg--GCCugGAGCUGGCgguCAUGaugaGCg -3' miRNA: 3'- gGCagaUGGugUUCGACCG---GUACg---CG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 49228 | 0.67 | 0.919975 |
Target: 5'- cCCGgCUcCCACGccccgcucGGCUGGgcgcggcUCGUGCGCg -3' miRNA: 3'- -GGCaGAuGGUGU--------UCGACC-------GGUACGCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 77592 | 0.67 | 0.920543 |
Target: 5'- gCUG-CUGCCGCugacgGAGCUGGaCCucUGCGg -3' miRNA: 3'- -GGCaGAUGGUG-----UUCGACC-GGu-ACGCg -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 78438 | 0.67 | 0.920543 |
Target: 5'- gCCGUCaACCGCGuGCUGcGCgAgGCGa -3' miRNA: 3'- -GGCAGaUGGUGUuCGAC-CGgUaCGCg -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 129212 | 0.67 | 0.920543 |
Target: 5'- cCCGgggGCCGCcagcaggcAGCUGGCgCGggUGCGCc -3' miRNA: 3'- -GGCagaUGGUGu-------UCGACCG-GU--ACGCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 102217 | 0.67 | 0.920543 |
Target: 5'- cCCG-CacCCACGGGgaGGCgcCGUGCGCc -3' miRNA: 3'- -GGCaGauGGUGUUCgaCCG--GUACGCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 86234 | 0.67 | 0.920543 |
Target: 5'- cCCGcgCUGCgACAucggcgccguGCUGGCCGUGgucgacgacgacCGCg -3' miRNA: 3'- -GGCa-GAUGgUGUu---------CGACCGGUAC------------GCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 75854 | 0.67 | 0.920543 |
Target: 5'- cCCGUCgacggggcGCCccuGCGuguccGCgugGGUCAUGCGCg -3' miRNA: 3'- -GGCAGa-------UGG---UGUu----CGa--CCGGUACGCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 37164 | 0.67 | 0.920543 |
Target: 5'- aCCGUCU-CCGCcGGCgcccgccgcGGCCccGCGg -3' miRNA: 3'- -GGCAGAuGGUGuUCGa--------CCGGuaCGCg -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 4961 | 0.67 | 0.920543 |
Target: 5'- cCCGUCgGCCAUGAGCgagaGGUgGUuguuguggagcgGCGCu -3' miRNA: 3'- -GGCAGaUGGUGUUCGa---CCGgUA------------CGCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 134600 | 0.67 | 0.920543 |
Target: 5'- cCCGgugacCCugGAGUcgGGCCA-GCGCg -3' miRNA: 3'- -GGCagau-GGugUUCGa-CCGGUaCGCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 103032 | 0.67 | 0.920543 |
Target: 5'- gCC-UCgggGCCugGuucgcgcuGCUGGCCGagGCGCa -3' miRNA: 3'- -GGcAGa--UGGugUu-------CGACCGGUa-CGCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 98337 | 0.67 | 0.920543 |
Target: 5'- gCCG-CggGCCGCGAGaCgcccgcGGgCGUGCGCg -3' miRNA: 3'- -GGCaGa-UGGUGUUC-Ga-----CCgGUACGCG- -5' |
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29543 | 5' | -54.5 | NC_006151.1 | + | 6383 | 0.67 | 0.920543 |
Target: 5'- --uUCUGCCugA-GCgaGGCCggGCGCc -3' miRNA: 3'- ggcAGAUGGugUuCGa-CCGGuaCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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