miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 102217 0.67 0.920543
Target:  5'- cCCG-CacCCACGGGgaGGCgcCGUGCGCc -3'
miRNA:   3'- -GGCaGauGGUGUUCgaCCG--GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 129212 0.67 0.920543
Target:  5'- cCCGgggGCCGCcagcaggcAGCUGGCgCGggUGCGCc -3'
miRNA:   3'- -GGCagaUGGUGu-------UCGACCG-GU--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 78438 0.67 0.920543
Target:  5'- gCCGUCaACCGCGuGCUGcGCgAgGCGa -3'
miRNA:   3'- -GGCAGaUGGUGUuCGAC-CGgUaCGCg -5'
29543 5' -54.5 NC_006151.1 + 91121 0.67 0.920543
Target:  5'- cCCuUCgccacgGCgGCGAGCuUGGCCAccuggggGCGCg -3'
miRNA:   3'- -GGcAGa-----UGgUGUUCG-ACCGGUa------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 134600 0.67 0.920543
Target:  5'- cCCGgugacCCugGAGUcgGGCCA-GCGCg -3'
miRNA:   3'- -GGCagau-GGugUUCGa-CCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 103032 0.67 0.920543
Target:  5'- gCC-UCgggGCCugGuucgcgcuGCUGGCCGagGCGCa -3'
miRNA:   3'- -GGcAGa--UGGugUu-------CGACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 98337 0.67 0.920543
Target:  5'- gCCG-CggGCCGCGAGaCgcccgcGGgCGUGCGCg -3'
miRNA:   3'- -GGCaGa-UGGUGUUC-Ga-----CCgGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 54082 0.67 0.914755
Target:  5'- aCCcUCUGCgGCGgcGGCggcGGCCAUGUcgGCu -3'
miRNA:   3'- -GGcAGAUGgUGU--UCGa--CCGGUACG--CG- -5'
29543 5' -54.5 NC_006151.1 + 63571 0.67 0.914755
Target:  5'- --aUCUGCCGaAAGUUGGCgugGCGCg -3'
miRNA:   3'- ggcAGAUGGUgUUCGACCGguaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 64339 0.67 0.914755
Target:  5'- aCGUCgGCgGgAAGCgcgGGCCGUcggccccccaGCGCa -3'
miRNA:   3'- gGCAGaUGgUgUUCGa--CCGGUA----------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 139916 0.67 0.914755
Target:  5'- uCCG-C-GCCGCGGGCUcgucGCCGUGgGCc -3'
miRNA:   3'- -GGCaGaUGGUGUUCGAc---CGGUACgCG- -5'
29543 5' -54.5 NC_006151.1 + 78585 0.67 0.914755
Target:  5'- aCGg--GCCugGAGCUGGCgguCAUGaugaGCg -3'
miRNA:   3'- gGCagaUGGugUUCGACCG---GUACg---CG- -5'
29543 5' -54.5 NC_006151.1 + 49228 0.67 0.919975
Target:  5'- cCCGgCUcCCACGccccgcucGGCUGGgcgcggcUCGUGCGCg -3'
miRNA:   3'- -GGCaGAuGGUGU--------UCGACC-------GGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 77592 0.67 0.920543
Target:  5'- gCUG-CUGCCGCugacgGAGCUGGaCCucUGCGg -3'
miRNA:   3'- -GGCaGAUGGUG-----UUCGACC-GGu-ACGCg -5'
29543 5' -54.5 NC_006151.1 + 6383 0.67 0.920543
Target:  5'- --uUCUGCCugA-GCgaGGCCggGCGCc -3'
miRNA:   3'- ggcAGAUGGugUuCGa-CCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 97788 0.68 0.889195
Target:  5'- aCgGUCgcgaaGCgCuCAGGCgcgcGGCCGUGCGCc -3'
miRNA:   3'- -GgCAGa----UG-GuGUUCGa---CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 65442 0.68 0.889195
Target:  5'- gCCGggaa-CAUGAGCUGGCgCAgcgGCGCc -3'
miRNA:   3'- -GGCagaugGUGUUCGACCG-GUa--CGCG- -5'
29543 5' -54.5 NC_006151.1 + 56656 0.68 0.889195
Target:  5'- gCCGUgUACCGCuGGUggacgacgGcGCCGcGCGCg -3'
miRNA:   3'- -GGCAgAUGGUGuUCGa-------C-CGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 70999 0.68 0.889195
Target:  5'- gCCGUg-GCCAUcguGGGC--GCCAUGCGCc -3'
miRNA:   3'- -GGCAgaUGGUG---UUCGacCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 59854 0.68 0.885036
Target:  5'- uCCGgggggcgcagCUGCCGCAGcaccGCUGGCUGgcgaaggcguccagGCGCg -3'
miRNA:   3'- -GGCa---------GAUGGUGUU----CGACCGGUa-------------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.