miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 69575 0.71 0.744156
Target:  5'- aCCGggUGCCGCGccgcgacgAGCUcGGCCGcgcgGCGCa -3'
miRNA:   3'- -GGCagAUGGUGU--------UCGA-CCGGUa---CGCG- -5'
29543 5' -54.5 NC_006151.1 + 131761 0.71 0.745138
Target:  5'- aCCGUCgcggucgcgaccgcgGCCGCGGGCgccGCCGUcgucaGCGCg -3'
miRNA:   3'- -GGCAGa--------------UGGUGUUCGac-CGGUA-----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 100279 0.71 0.753924
Target:  5'- uUCGUCUuCCGCGGGCgcacGGCCuccgucuucGCGCc -3'
miRNA:   3'- -GGCAGAuGGUGUUCGa---CCGGua-------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 59231 0.71 0.753924
Target:  5'- aCGUCUGCC---GGCUgcGGCCGacGCGCa -3'
miRNA:   3'- gGCAGAUGGuguUCGA--CCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 122183 0.7 0.760696
Target:  5'- cUCGUggUGCCGCcgGAGCUGuacgacccggcgcaGCCGUGCGCg -3'
miRNA:   3'- -GGCAg-AUGGUG--UUCGAC--------------CGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 88344 0.7 0.763581
Target:  5'- gCUGUCgcggUACCACAcggccucgcAGCgcaGGCUcgGCGCg -3'
miRNA:   3'- -GGCAG----AUGGUGU---------UCGa--CCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 118715 0.7 0.773119
Target:  5'- cCCGcUCUGCCGCcuGCUgcacGGCUAcGUGCu -3'
miRNA:   3'- -GGC-AGAUGGUGuuCGA----CCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 124053 0.7 0.773119
Target:  5'- aCGgcgACCugGAcGCgcggacGGCCGUGCGCg -3'
miRNA:   3'- gGCagaUGGugUU-CGa-----CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 131932 0.7 0.773119
Target:  5'- gCGgugCUGCCgu-AGCUGGCCAcGgGCg -3'
miRNA:   3'- gGCa--GAUGGuguUCGACCGGUaCgCG- -5'
29543 5' -54.5 NC_006151.1 + 107583 0.7 0.782528
Target:  5'- gCUGaCUcccGCCGcCAAGCUGGCCccgccgGCGCc -3'
miRNA:   3'- -GGCaGA---UGGU-GUUCGACCGGua----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 64530 0.7 0.791799
Target:  5'- gCCGcCgcgGCCGCGucgggggcGGCgaGGCCGUGgCGCg -3'
miRNA:   3'- -GGCaGa--UGGUGU--------UCGa-CCGGUAC-GCG- -5'
29543 5' -54.5 NC_006151.1 + 139816 0.7 0.791799
Target:  5'- gCCGUCU-CCGCGAcgcacGCgcgGGUCG-GCGCg -3'
miRNA:   3'- -GGCAGAuGGUGUU-----CGa--CCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 64785 0.7 0.791799
Target:  5'- gCCGg--GgCGCGAGCUGGCCA--CGCc -3'
miRNA:   3'- -GGCagaUgGUGUUCGACCGGUacGCG- -5'
29543 5' -54.5 NC_006151.1 + 102033 0.7 0.800922
Target:  5'- gCCGUCcgggAgCugGAGCUGGCCccGCu- -3'
miRNA:   3'- -GGCAGa---UgGugUUCGACCGGuaCGcg -5'
29543 5' -54.5 NC_006151.1 + 70885 0.7 0.800922
Target:  5'- gCCGaCgagAUCGCGcGCUGcGUCGUGCGCu -3'
miRNA:   3'- -GGCaGa--UGGUGUuCGAC-CGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 100216 0.7 0.800922
Target:  5'- gCCacg-GCCGCGGGCgccgUGGCCGaGCGCg -3'
miRNA:   3'- -GGcagaUGGUGUUCG----ACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 65771 0.7 0.800922
Target:  5'- cCCGUC-GCCGCcGGCggcGGCgAUgGCGCc -3'
miRNA:   3'- -GGCAGaUGGUGuUCGa--CCGgUA-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 67709 0.69 0.809889
Target:  5'- uCCGcCUggcGCCACAGGCacGGCgCG-GCGCa -3'
miRNA:   3'- -GGCaGA---UGGUGUUCGa-CCG-GUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 117246 0.69 0.809889
Target:  5'- aCGUCggcggGCCcgAGGCgcgGGCCGcGCGCg -3'
miRNA:   3'- gGCAGa----UGGugUUCGa--CCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 68283 0.69 0.818691
Target:  5'- gCCGggcGCCAC-GGC-GGCCAgGCGCg -3'
miRNA:   3'- -GGCagaUGGUGuUCGaCCGGUaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.