miRNA display CGI


Results 61 - 80 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 18473 0.69 0.822164
Target:  5'- gCCGUCguaguaguCCucgugcguggGCAGGCUGGUguacaccggcgagagCAUGCGCg -3'
miRNA:   3'- -GGCAGau------GG----------UGUUCGACCG---------------GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 86702 0.69 0.827319
Target:  5'- gCUG-CgcgACCGCuggGAGCUGGUCGcgGCGCg -3'
miRNA:   3'- -GGCaGa--UGGUG---UUCGACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 119081 0.69 0.835766
Target:  5'- cCCGUCU--CGCAGGCcgcgGcGCUcgGCGCg -3'
miRNA:   3'- -GGCAGAugGUGUUCGa---C-CGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 17102 0.69 0.835766
Target:  5'- cCCGUCggggcGCCGgGGGCUccggcGGCgGUGCuGCg -3'
miRNA:   3'- -GGCAGa----UGGUgUUCGA-----CCGgUACG-CG- -5'
29543 5' -54.5 NC_006151.1 + 105489 0.69 0.835766
Target:  5'- gCCGg-UGCCGuCGAGgaGGaCGUGCGCg -3'
miRNA:   3'- -GGCagAUGGU-GUUCgaCCgGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 17066 0.69 0.835766
Target:  5'- uCCGUCaGCC-CGGGCcgccgccgGGUCAgGCGCg -3'
miRNA:   3'- -GGCAGaUGGuGUUCGa-------CCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 130112 0.69 0.835766
Target:  5'- gCCGUgaaGCC-CGGGUucUGGCCGUGgGCg -3'
miRNA:   3'- -GGCAga-UGGuGUUCG--ACCGGUACgCG- -5'
29543 5' -54.5 NC_006151.1 + 105057 0.69 0.835766
Target:  5'- gCCGUCgaggaggcGCC-CGAGCUGGaCGUGCa- -3'
miRNA:   3'- -GGCAGa-------UGGuGUUCGACCgGUACGcg -5'
29543 5' -54.5 NC_006151.1 + 92047 0.69 0.844023
Target:  5'- cCCG-CUGCCu---GCUGcGCCugcUGCGCa -3'
miRNA:   3'- -GGCaGAUGGuguuCGAC-CGGu--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 92149 0.69 0.844023
Target:  5'- gCGcCaagGCCAUcauGGCcgcGGCCGUGCGCg -3'
miRNA:   3'- gGCaGa--UGGUGu--UCGa--CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 81393 0.69 0.844023
Target:  5'- gCCG-CggcGCC-CAGGUUGGCCAgggugGCGUc -3'
miRNA:   3'- -GGCaGa--UGGuGUUCGACCGGUa----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 71312 0.69 0.844023
Target:  5'- gCGUCUucACCgGCAAGCgcGGCgGcUGCGCc -3'
miRNA:   3'- gGCAGA--UGG-UGUUCGa-CCGgU-ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 114304 0.68 0.852082
Target:  5'- uUCGcCUACUACGuGCUgcgcgacgggGGCC-UGCGCg -3'
miRNA:   3'- -GGCaGAUGGUGUuCGA----------CCGGuACGCG- -5'
29543 5' -54.5 NC_006151.1 + 85753 0.68 0.859938
Target:  5'- --cUCUuCCcCGGGCUGGCCGcgcugGCGCu -3'
miRNA:   3'- ggcAGAuGGuGUUCGACCGGUa----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 57699 0.68 0.859938
Target:  5'- cCCGcCgaagaagGCCACGAGCgccGGCUugaccGCGCg -3'
miRNA:   3'- -GGCaGa------UGGUGUUCGa--CCGGua---CGCG- -5'
29543 5' -54.5 NC_006151.1 + 63996 0.68 0.867583
Target:  5'- uCCGUCUGCgUGCGGuGCgGcGCCAgGCGCc -3'
miRNA:   3'- -GGCAGAUG-GUGUU-CGaC-CGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 5696 0.68 0.867583
Target:  5'- gCCGgcgCUgcgGCCACcgcuGCUGGCUGUGCu- -3'
miRNA:   3'- -GGCa--GA---UGGUGuu--CGACCGGUACGcg -5'
29543 5' -54.5 NC_006151.1 + 57848 0.68 0.867583
Target:  5'- aCGggugCU-CCACGGcGCUGGUCGcGCGCc -3'
miRNA:   3'- gGCa---GAuGGUGUU-CGACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 106861 0.68 0.875011
Target:  5'- cCCGgCUcggGCCugAccCUGGCCGUGaCGCu -3'
miRNA:   3'- -GGCaGA---UGGugUucGACCGGUAC-GCG- -5'
29543 5' -54.5 NC_006151.1 + 76608 0.68 0.875011
Target:  5'- --aUCUGCCccgacgGCAGGaUGGCCggGCGCu -3'
miRNA:   3'- ggcAGAUGG------UGUUCgACCGGuaCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.