miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 122987 0.68 0.875011
Target:  5'- gCGUCgGCgACgAAGacgGGCCcgGCGCg -3'
miRNA:   3'- gGCAGaUGgUG-UUCga-CCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 111424 0.68 0.875011
Target:  5'- aCCGagcgCUGCCGCAucucGGCgcGGuCCAggagGCGCu -3'
miRNA:   3'- -GGCa---GAUGGUGU----UCGa-CC-GGUa---CGCG- -5'
29543 5' -54.5 NC_006151.1 + 106861 0.68 0.875011
Target:  5'- cCCGgCUcggGCCugAccCUGGCCGUGaCGCu -3'
miRNA:   3'- -GGCaGA---UGGugUucGACCGGUAC-GCG- -5'
29543 5' -54.5 NC_006151.1 + 37951 0.68 0.875011
Target:  5'- gCCG-CgugccCCGCGAGCUGGCgGacgccUGCGUc -3'
miRNA:   3'- -GGCaGau---GGUGUUCGACCGgU-----ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 76608 0.68 0.875011
Target:  5'- --aUCUGCCccgacgGCAGGaUGGCCggGCGCu -3'
miRNA:   3'- ggcAGAUGG------UGUUCgACCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 132337 0.68 0.87792
Target:  5'- gCCGUg-GCCACGuacaggugcaggaagAGCcagggGGCCAgGCGCg -3'
miRNA:   3'- -GGCAgaUGGUGU---------------UCGa----CCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 39438 0.68 0.881506
Target:  5'- gCGUCcGCCugGacccGGCcgcccagUGcGCCGUGCGCu -3'
miRNA:   3'- gGCAGaUGGugU----UCG-------AC-CGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 101498 0.68 0.882217
Target:  5'- aCGUCUucgacccgcacgGCCACGGGCagaucacccaGGCCuucgugGCGCg -3'
miRNA:   3'- gGCAGA------------UGGUGUUCGa---------CCGGua----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 89322 0.68 0.882217
Target:  5'- aUCG-C-ACgCGCGAGCgaGGCCAUGgCGCg -3'
miRNA:   3'- -GGCaGaUG-GUGUUCGa-CCGGUAC-GCG- -5'
29543 5' -54.5 NC_006151.1 + 59854 0.68 0.885036
Target:  5'- uCCGgggggcgcagCUGCCGCAGcaccGCUGGCUGgcgaaggcguccagGCGCg -3'
miRNA:   3'- -GGCa---------GAUGGUGUU----CGACCGGUa-------------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 70999 0.68 0.889195
Target:  5'- gCCGUg-GCCAUcguGGGC--GCCAUGCGCc -3'
miRNA:   3'- -GGCAgaUGGUG---UUCGacCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 56656 0.68 0.889195
Target:  5'- gCCGUgUACCGCuGGUggacgacgGcGCCGcGCGCg -3'
miRNA:   3'- -GGCAgAUGGUGuUCGa-------C-CGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 65442 0.68 0.889195
Target:  5'- gCCGggaa-CAUGAGCUGGCgCAgcgGCGCc -3'
miRNA:   3'- -GGCagaugGUGUUCGACCG-GUa--CGCG- -5'
29543 5' -54.5 NC_006151.1 + 97788 0.68 0.889195
Target:  5'- aCgGUCgcgaaGCgCuCAGGCgcgcGGCCGUGCGCc -3'
miRNA:   3'- -GgCAGa----UG-GuGUUCGa---CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 105704 0.68 0.889195
Target:  5'- gCCGgcgCgGCCGCGcGCcucgacgGcGCCGUGCGCg -3'
miRNA:   3'- -GGCa--GaUGGUGUuCGa------C-CGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 129432 0.67 0.893271
Target:  5'- aCGUCcgGCCcCAAGUgggcggggcgcacGGCCGUGgGCg -3'
miRNA:   3'- gGCAGa-UGGuGUUCGa------------CCGGUACgCG- -5'
29543 5' -54.5 NC_006151.1 + 118185 0.67 0.895278
Target:  5'- aCCGUCgagGCCGgcuucgcCGGGCacgUGGCCGUgguggcggGCGCc -3'
miRNA:   3'- -GGCAGa--UGGU-------GUUCG---ACCGGUA--------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 82857 0.67 0.895942
Target:  5'- uCCGUCgcggucuCCAU---CUGGCCGcgGCGCg -3'
miRNA:   3'- -GGCAGau-----GGUGuucGACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 135851 0.67 0.895942
Target:  5'- aCGuUCUGCCucacCGGGCacgUGGCCA-GCGUc -3'
miRNA:   3'- gGC-AGAUGGu---GUUCG---ACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 86621 0.67 0.895942
Target:  5'- gCCGg--ACCGCGAGCgcgugUGGCaCAUGaGCg -3'
miRNA:   3'- -GGCagaUGGUGUUCG-----ACCG-GUACgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.