miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 37164 0.67 0.920543
Target:  5'- aCCGUCU-CCGCcGGCgcccgccgcGGCCccGCGg -3'
miRNA:   3'- -GGCAGAuGGUGuUCGa--------CCGGuaCGCg -5'
29543 5' -54.5 NC_006151.1 + 75854 0.67 0.920543
Target:  5'- cCCGUCgacggggcGCCccuGCGuguccGCgugGGUCAUGCGCg -3'
miRNA:   3'- -GGCAGa-------UGG---UGUu----CGa--CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 91121 0.67 0.920543
Target:  5'- cCCuUCgccacgGCgGCGAGCuUGGCCAccuggggGCGCg -3'
miRNA:   3'- -GGcAGa-----UGgUGUUCG-ACCGGUa------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 78438 0.67 0.920543
Target:  5'- gCCGUCaACCGCGuGCUGcGCgAgGCGa -3'
miRNA:   3'- -GGCAGaUGGUGUuCGAC-CGgUaCGCg -5'
29543 5' -54.5 NC_006151.1 + 129212 0.67 0.920543
Target:  5'- cCCGgggGCCGCcagcaggcAGCUGGCgCGggUGCGCc -3'
miRNA:   3'- -GGCagaUGGUGu-------UCGACCG-GU--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 102217 0.67 0.920543
Target:  5'- cCCG-CacCCACGGGgaGGCgcCGUGCGCc -3'
miRNA:   3'- -GGCaGauGGUGUUCgaCCG--GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 86234 0.67 0.920543
Target:  5'- cCCGcgCUGCgACAucggcgccguGCUGGCCGUGgucgacgacgacCGCg -3'
miRNA:   3'- -GGCa-GAUGgUGUu---------CGACCGGUAC------------GCG- -5'
29543 5' -54.5 NC_006151.1 + 49228 0.67 0.919975
Target:  5'- cCCGgCUcCCACGccccgcucGGCUGGgcgcggcUCGUGCGCg -3'
miRNA:   3'- -GGCaGAuGGUGU--------UCGACC-------GGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 58934 0.67 0.914755
Target:  5'- gCCGUCauagcGCCGCaAAGUccacGGCCcccucgGUGCGCg -3'
miRNA:   3'- -GGCAGa----UGGUG-UUCGa---CCGG------UACGCG- -5'
29543 5' -54.5 NC_006151.1 + 10506 0.67 0.914755
Target:  5'- cCCG-CcGCCGCAGGCgcgucCCcgGCGCg -3'
miRNA:   3'- -GGCaGaUGGUGUUCGacc--GGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 54082 0.67 0.914755
Target:  5'- aCCcUCUGCgGCGgcGGCggcGGCCAUGUcgGCu -3'
miRNA:   3'- -GGcAGAUGgUGU--UCGa--CCGGUACG--CG- -5'
29543 5' -54.5 NC_006151.1 + 63571 0.67 0.914755
Target:  5'- --aUCUGCCGaAAGUUGGCgugGCGCg -3'
miRNA:   3'- ggcAGAUGGUgUUCGACCGguaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 64339 0.67 0.914755
Target:  5'- aCGUCgGCgGgAAGCgcgGGCCGUcggccccccaGCGCa -3'
miRNA:   3'- gGCAGaUGgUgUUCGa--CCGGUA----------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 139916 0.67 0.914755
Target:  5'- uCCG-C-GCCGCGGGCUcgucGCCGUGgGCc -3'
miRNA:   3'- -GGCaGaUGGUGUUCGAc---CGGUACgCG- -5'
29543 5' -54.5 NC_006151.1 + 78585 0.67 0.914755
Target:  5'- aCGg--GCCugGAGCUGGCgguCAUGaugaGCg -3'
miRNA:   3'- gGCagaUGGugUUCGACCG---GUACg---CG- -5'
29543 5' -54.5 NC_006151.1 + 131238 0.67 0.914163
Target:  5'- gCCGUCggccGCCACGuacAGCUccccgucGGaCCAcGCGCc -3'
miRNA:   3'- -GGCAGa---UGGUGU---UCGA-------CC-GGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 49474 0.67 0.913569
Target:  5'- cCCGUCga-CugGAGCguggacugagucGGgCGUGCGCg -3'
miRNA:   3'- -GGCAGaugGugUUCGa-----------CCgGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 4185 0.67 0.913569
Target:  5'- gCCGUC-ACCuccucgagGCAGGCgggcccgagggcGGCCGggGCGCg -3'
miRNA:   3'- -GGCAGaUGG--------UGUUCGa-----------CCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 73898 0.67 0.912372
Target:  5'- gCGUCguugggcugguagGCCAUcauGAGCaGGCCGUGgUGCa -3'
miRNA:   3'- gGCAGa------------UGGUG---UUCGaCCGGUAC-GCG- -5'
29543 5' -54.5 NC_006151.1 + 119112 0.67 0.908725
Target:  5'- aCGUgaGCCGCGcGGCcGGCCucguggggGCGCu -3'
miRNA:   3'- gGCAgaUGGUGU-UCGaCCGGua------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.