miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 59231 0.71 0.753924
Target:  5'- aCGUCUGCC---GGCUgcGGCCGacGCGCa -3'
miRNA:   3'- gGCAGAUGGuguUCGA--CCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 59595 0.73 0.621812
Target:  5'- cCCGUCggccACCACGGGCacGGCCccggagGCGUa -3'
miRNA:   3'- -GGCAGa---UGGUGUUCGa-CCGGua----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 59854 0.68 0.885036
Target:  5'- uCCGgggggcgcagCUGCCGCAGcaccGCUGGCUGgcgaaggcguccagGCGCg -3'
miRNA:   3'- -GGCa---------GAUGGUGUU----CGACCGGUa-------------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 60300 0.66 0.931384
Target:  5'- aCGgagGCCAUGuccgGGCCGUGCGCc -3'
miRNA:   3'- gGCagaUGGUGUucgaCCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 61454 0.66 0.936438
Target:  5'- gCGUCcGCCGCcauguGCgGGCC--GCGCa -3'
miRNA:   3'- gGCAGaUGGUGuu---CGaCCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 63571 0.67 0.914755
Target:  5'- --aUCUGCCGaAAGUUGGCgugGCGCg -3'
miRNA:   3'- ggcAGAUGGUgUUCGACCGguaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 63996 0.68 0.867583
Target:  5'- uCCGUCUGCgUGCGGuGCgGcGCCAgGCGCc -3'
miRNA:   3'- -GGCAGAUG-GUGUU-CGaC-CGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 64184 0.66 0.925543
Target:  5'- cCCGUC-GCCGCccgcgaucgccccGGGCaGGUCcgGCGUg -3'
miRNA:   3'- -GGCAGaUGGUG-------------UUCGaCCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 64339 0.67 0.914755
Target:  5'- aCGUCgGCgGgAAGCgcgGGCCGUcggccccccaGCGCa -3'
miRNA:   3'- gGCAGaUGgUgUUCGa--CCGGUA----------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 64530 0.7 0.791799
Target:  5'- gCCGcCgcgGCCGCGucgggggcGGCgaGGCCGUGgCGCg -3'
miRNA:   3'- -GGCaGa--UGGUGU--------UCGa-CCGGUAC-GCG- -5'
29543 5' -54.5 NC_006151.1 + 64736 0.78 0.357278
Target:  5'- aCCGg--GCCACGAGCUcgagcagcggGGCCAccgUGCGCg -3'
miRNA:   3'- -GGCagaUGGUGUUCGA----------CCGGU---ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 64785 0.7 0.791799
Target:  5'- gCCGg--GgCGCGAGCUGGCCA--CGCc -3'
miRNA:   3'- -GGCagaUgGUGUUCGACCGGUacGCG- -5'
29543 5' -54.5 NC_006151.1 + 64955 0.66 0.931384
Target:  5'- gCCG-C-GCUGCGGGCgcaGGCCGaGCGCc -3'
miRNA:   3'- -GGCaGaUGGUGUUCGa--CCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 65442 0.68 0.889195
Target:  5'- gCCGggaa-CAUGAGCUGGCgCAgcgGCGCc -3'
miRNA:   3'- -GGCagaugGUGUUCGACCG-GUa--CGCG- -5'
29543 5' -54.5 NC_006151.1 + 65771 0.7 0.800922
Target:  5'- cCCGUC-GCCGCcGGCggcGGCgAUgGCGCc -3'
miRNA:   3'- -GGCAGaUGGUGuUCGa--CCGgUA-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 66354 0.66 0.938391
Target:  5'- gCGgcgCUACUacgcggaccucaagcGCAAGCgcgaGGCCAgugaGCGCg -3'
miRNA:   3'- gGCa--GAUGG---------------UGUUCGa---CCGGUa---CGCG- -5'
29543 5' -54.5 NC_006151.1 + 67709 0.69 0.809889
Target:  5'- uCCGcCUggcGCCACAGGCacGGCgCG-GCGCa -3'
miRNA:   3'- -GGCaGA---UGGUGUUCGa-CCG-GUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 68002 0.66 0.941248
Target:  5'- gCCG-CgGCCACGGGCUcGGCg--GCGUc -3'
miRNA:   3'- -GGCaGaUGGUGUUCGA-CCGguaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 68188 0.66 0.930865
Target:  5'- gCGUCguugagcaggACCACGacguggaAGC-GGCCcUGCGCc -3'
miRNA:   3'- gGCAGa---------UGGUGU-------UCGaCCGGuACGCG- -5'
29543 5' -54.5 NC_006151.1 + 68283 0.69 0.818691
Target:  5'- gCCGggcGCCAC-GGC-GGCCAgGCGCg -3'
miRNA:   3'- -GGCagaUGGUGuUCGaCCGGUaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.