miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 69575 0.71 0.744156
Target:  5'- aCCGggUGCCGCGccgcgacgAGCUcGGCCGcgcgGCGCa -3'
miRNA:   3'- -GGCagAUGGUGU--------UCGA-CCGGUa---CGCG- -5'
29543 5' -54.5 NC_006151.1 + 69746 0.68 0.875011
Target:  5'- cCCG-CgGCCGCGAccGCcggGGCCAcGCGCc -3'
miRNA:   3'- -GGCaGaUGGUGUU--CGa--CCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 70476 0.72 0.673507
Target:  5'- aCGUCUGCgACGAGCacaUGcGCCGcguggugGCGCa -3'
miRNA:   3'- gGCAGAUGgUGUUCG---AC-CGGUa------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 70885 0.7 0.800922
Target:  5'- gCCGaCgagAUCGCGcGCUGcGUCGUGCGCu -3'
miRNA:   3'- -GGCaGa--UGGUGUuCGAC-CGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 70999 0.68 0.889195
Target:  5'- gCCGUg-GCCAUcguGGGC--GCCAUGCGCc -3'
miRNA:   3'- -GGCAgaUGGUG---UUCGacCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 71076 0.75 0.497296
Target:  5'- -gGUCUucuaccaccacggcGCCGCGGGCgcggGcGCCGUGCGCu -3'
miRNA:   3'- ggCAGA--------------UGGUGUUCGa---C-CGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 71312 0.69 0.844023
Target:  5'- gCGUCUucACCgGCAAGCgcGGCgGcUGCGCc -3'
miRNA:   3'- gGCAGA--UGG-UGUUCGa-CCGgU-ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 71787 0.8 0.297349
Target:  5'- gCGggggCUGCCGCAccAGCUGGCCGagcucGCGCg -3'
miRNA:   3'- gGCa---GAUGGUGU--UCGACCGGUa----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 73710 0.73 0.601131
Target:  5'- gCGUgCUggGCCACGGGCUGGCgCAccgugGCGUa -3'
miRNA:   3'- gGCA-GA--UGGUGUUCGACCG-GUa----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 73898 0.67 0.912372
Target:  5'- gCGUCguugggcugguagGCCAUcauGAGCaGGCCGUGgUGCa -3'
miRNA:   3'- gGCAGa------------UGGUG---UUCGaCCGGUAC-GCG- -5'
29543 5' -54.5 NC_006151.1 + 74198 0.66 0.926086
Target:  5'- aUCGUCUG-CACcAGCUGGUacacgcgguCGUaGCGCa -3'
miRNA:   3'- -GGCAGAUgGUGuUCGACCG---------GUA-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 75854 0.67 0.920543
Target:  5'- cCCGUCgacggggcGCCccuGCGuguccGCgugGGUCAUGCGCg -3'
miRNA:   3'- -GGCAGa-------UGG---UGUu----CGa--CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 76608 0.68 0.875011
Target:  5'- --aUCUGCCccgacgGCAGGaUGGCCggGCGCu -3'
miRNA:   3'- ggcAGAUGG------UGUUCgACCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 77592 0.67 0.920543
Target:  5'- gCUG-CUGCCGCugacgGAGCUGGaCCucUGCGg -3'
miRNA:   3'- -GGCaGAUGGUG-----UUCGACC-GGu-ACGCg -5'
29543 5' -54.5 NC_006151.1 + 78438 0.67 0.920543
Target:  5'- gCCGUCaACCGCGuGCUGcGCgAgGCGa -3'
miRNA:   3'- -GGCAGaUGGUGUuCGAC-CGgUaCGCg -5'
29543 5' -54.5 NC_006151.1 + 78585 0.67 0.914755
Target:  5'- aCGg--GCCugGAGCUGGCgguCAUGaugaGCg -3'
miRNA:   3'- gGCagaUGGugUUCGACCG---GUACg---CG- -5'
29543 5' -54.5 NC_006151.1 + 81393 0.69 0.844023
Target:  5'- gCCG-CggcGCC-CAGGUUGGCCAgggugGCGUc -3'
miRNA:   3'- -GGCaGa--UGGuGUUCGACCGGUa----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 81985 0.66 0.941248
Target:  5'- cCCGggCUgcACCACGgcggccagGGC-GGCCGcgUGCGCc -3'
miRNA:   3'- -GGCa-GA--UGGUGU--------UCGaCCGGU--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 82119 0.66 0.92982
Target:  5'- gCGUgUAcacguggaagcggcCCGCGGGCgGGCCcgGCGg -3'
miRNA:   3'- gGCAgAU--------------GGUGUUCGaCCGGuaCGCg -5'
29543 5' -54.5 NC_006151.1 + 82385 0.74 0.567241
Target:  5'- gCGUCgaagGCCACGAGCUccgcgcccgagggcGGCCccgagagGCGCg -3'
miRNA:   3'- gGCAGa---UGGUGUUCGA--------------CCGGua-----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.