miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 82585 0.66 0.940778
Target:  5'- gCCGUCgccgACCaggacgaACAGGgUGGgCccGCGCg -3'
miRNA:   3'- -GGCAGa---UGG-------UGUUCgACCgGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 82857 0.67 0.895942
Target:  5'- uCCGUCgcggucuCCAU---CUGGCCGcgGCGCg -3'
miRNA:   3'- -GGCAGau-----GGUGuucGACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 85225 0.72 0.673507
Target:  5'- cCCGagUACCugGAcgcGCUGaGCCAgGCGCu -3'
miRNA:   3'- -GGCagAUGGugUU---CGAC-CGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 85346 0.66 0.936438
Target:  5'- gCGUgCUcGCCGC--GCUGGCgCGccUGCGCg -3'
miRNA:   3'- gGCA-GA-UGGUGuuCGACCG-GU--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 85753 0.68 0.859938
Target:  5'- --cUCUuCCcCGGGCUGGCCGcgcugGCGCu -3'
miRNA:   3'- ggcAGAuGGuGUUCGACCGGUa----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 86234 0.67 0.920543
Target:  5'- cCCGcgCUGCgACAucggcgccguGCUGGCCGUGgucgacgacgacCGCg -3'
miRNA:   3'- -GGCa-GAUGgUGUu---------CGACCGGUAC------------GCG- -5'
29543 5' -54.5 NC_006151.1 + 86621 0.67 0.895942
Target:  5'- gCCGg--ACCGCGAGCgcgugUGGCaCAUGaGCg -3'
miRNA:   3'- -GGCagaUGGUGUUCG-----ACCG-GUACgCG- -5'
29543 5' -54.5 NC_006151.1 + 86702 0.69 0.827319
Target:  5'- gCUG-CgcgACCGCuggGAGCUGGUCGcgGCGCg -3'
miRNA:   3'- -GGCaGa--UGGUG---UUCGACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 88344 0.7 0.763581
Target:  5'- gCUGUCgcggUACCACAcggccucgcAGCgcaGGCUcgGCGCg -3'
miRNA:   3'- -GGCAG----AUGGUGU---------UCGa--CCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 89322 0.68 0.882217
Target:  5'- aUCG-C-ACgCGCGAGCgaGGCCAUGgCGCg -3'
miRNA:   3'- -GGCaGaUG-GUGUUCGa-CCGGUAC-GCG- -5'
29543 5' -54.5 NC_006151.1 + 90229 0.71 0.734288
Target:  5'- gCCGag-AUCGCGucgcGGCUGGCCA-GCGCc -3'
miRNA:   3'- -GGCagaUGGUGU----UCGACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 90959 0.66 0.935943
Target:  5'- uCCGUCgcgccgACCGCGucGacgcccuggcgccGCUGGCUG-GCGCg -3'
miRNA:   3'- -GGCAGa-----UGGUGU--U-------------CGACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 91121 0.67 0.920543
Target:  5'- cCCuUCgccacgGCgGCGAGCuUGGCCAccuggggGCGCg -3'
miRNA:   3'- -GGcAGa-----UGgUGUUCG-ACCGGUa------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 91660 0.73 0.632168
Target:  5'- cCCGUCguggAUCACcuGCgccgGGUgGUGCGCg -3'
miRNA:   3'- -GGCAGa---UGGUGuuCGa---CCGgUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 92047 0.69 0.844023
Target:  5'- cCCG-CUGCCu---GCUGcGCCugcUGCGCa -3'
miRNA:   3'- -GGCaGAUGGuguuCGAC-CGGu--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 92149 0.69 0.844023
Target:  5'- gCGcCaagGCCAUcauGGCcgcGGCCGUGCGCg -3'
miRNA:   3'- gGCaGa--UGGUGu--UCGa--CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 94299 0.71 0.744156
Target:  5'- uCCGUCUcgaGCCAgcGGUUGGCCA--CGCu -3'
miRNA:   3'- -GGCAGA---UGGUguUCGACCGGUacGCG- -5'
29543 5' -54.5 NC_006151.1 + 94777 0.67 0.908725
Target:  5'- gCGUCU-CCAUGAGC-GGCagguugggGCGCa -3'
miRNA:   3'- gGCAGAuGGUGUUCGaCCGgua-----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 97161 0.74 0.570305
Target:  5'- aCCGa--GCCGCAGcGCUcGGCCcgGCGCa -3'
miRNA:   3'- -GGCagaUGGUGUU-CGA-CCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 97670 0.66 0.945816
Target:  5'- gCCGcggGCCACGcacgugacGCUGGCCAgccggucuUGCGUc -3'
miRNA:   3'- -GGCagaUGGUGUu-------CGACCGGU--------ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.