miRNA display CGI


Results 101 - 120 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 97788 0.68 0.889195
Target:  5'- aCgGUCgcgaaGCgCuCAGGCgcgcGGCCGUGCGCc -3'
miRNA:   3'- -GgCAGa----UG-GuGUUCGa---CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 98020 0.66 0.950144
Target:  5'- gCCGgccagguCCGCGGGgUGGCgCA-GCGCg -3'
miRNA:   3'- -GGCagau---GGUGUUCgACCG-GUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 98337 0.67 0.920543
Target:  5'- gCCG-CggGCCGCGAGaCgcccgcGGgCGUGCGCg -3'
miRNA:   3'- -GGCaGa-UGGUGUUC-Ga-----CCgGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 98805 0.75 0.50022
Target:  5'- aCUGggcgCUGCCGCuGGCguUGGCgGUGCGCc -3'
miRNA:   3'- -GGCa---GAUGGUGuUCG--ACCGgUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 99402 0.71 0.734288
Target:  5'- aCGg--GCC-CGGGCUGGacuaCGUGCGCg -3'
miRNA:   3'- gGCagaUGGuGUUCGACCg---GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 99599 0.66 0.945816
Target:  5'- gCCGagcGCCGCGccgGGCUGGCgCAcaGCGCc -3'
miRNA:   3'- -GGCagaUGGUGU---UCGACCG-GUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 99956 0.66 0.950144
Target:  5'- gCGgCUACCGCAccaAGCUcGCC--GCGCu -3'
miRNA:   3'- gGCaGAUGGUGU---UCGAcCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 100031 0.72 0.663202
Target:  5'- aCGUCgaggcgcucGCgCACGAGCUgcacggGGUCGUGCGCg -3'
miRNA:   3'- gGCAGa--------UG-GUGUUCGA------CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 100216 0.7 0.800922
Target:  5'- gCCacg-GCCGCGGGCgccgUGGCCGaGCGCg -3'
miRNA:   3'- -GGcagaUGGUGUUCG----ACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 100279 0.71 0.753924
Target:  5'- uUCGUCUuCCGCGGGCgcacGGCCuccgucuucGCGCc -3'
miRNA:   3'- -GGCAGAuGGUGUUCGa---CCGGua-------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 100684 0.66 0.941248
Target:  5'- cUCGUCgcgacgcuCCGCGAGacCUGGaCCGagGCGCg -3'
miRNA:   3'- -GGCAGau------GGUGUUC--GACC-GGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 100878 0.71 0.72433
Target:  5'- gCCGUgaACCugGAgguGCUGcGCCGcgGCGCg -3'
miRNA:   3'- -GGCAgaUGGugUU---CGAC-CGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 101498 0.68 0.882217
Target:  5'- aCGUCUucgacccgcacgGCCACGGGCagaucacccaGGCCuucgugGCGCg -3'
miRNA:   3'- gGCAGA------------UGGUGUUCGa---------CCGGua----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 102033 0.7 0.800922
Target:  5'- gCCGUCcgggAgCugGAGCUGGCCccGCu- -3'
miRNA:   3'- -GGCAGa---UgGugUUCGACCGGuaCGcg -5'
29543 5' -54.5 NC_006151.1 + 102217 0.67 0.920543
Target:  5'- cCCG-CacCCACGGGgaGGCgcCGUGCGCc -3'
miRNA:   3'- -GGCaGauGGUGUUCgaCCG--GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 102381 0.66 0.936438
Target:  5'- cCCGUg-GCCAagcuggcGCUGGUCGcgGCGCg -3'
miRNA:   3'- -GGCAgaUGGUguu----CGACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 103032 0.67 0.920543
Target:  5'- gCC-UCgggGCCugGuucgcgcuGCUGGCCGagGCGCa -3'
miRNA:   3'- -GGcAGa--UGGugUu-------CGACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 103260 0.66 0.931384
Target:  5'- uCCG-C-GCCAUggGC-GGCCAcGUGCu -3'
miRNA:   3'- -GGCaGaUGGUGuuCGaCCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 103507 0.71 0.722328
Target:  5'- gCG-CUACCGCGAGCUGcugacguccgacCCcgGCGCg -3'
miRNA:   3'- gGCaGAUGGUGUUCGACc-----------GGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 104212 0.66 0.950144
Target:  5'- aCCGUg-ACCACGGcGCUGgacGCCGUGUucGCc -3'
miRNA:   3'- -GGCAgaUGGUGUU-CGAC---CGGUACG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.