miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 131761 0.71 0.745138
Target:  5'- aCCGUCgcggucgcgaccgcgGCCGCGGGCgccGCCGUcgucaGCGCg -3'
miRNA:   3'- -GGCAGa--------------UGGUGUUCGac-CGGUA-----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 131238 0.67 0.914163
Target:  5'- gCCGUCggccGCCACGuacAGCUccccgucGGaCCAcGCGCc -3'
miRNA:   3'- -GGCAGa---UGGUGU---UCGA-------CC-GGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 131101 0.67 0.908725
Target:  5'- aCGUCgGCgGgGGGCccGGCCGcgGCGCg -3'
miRNA:   3'- gGCAGaUGgUgUUCGa-CCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 130280 0.71 0.744156
Target:  5'- cCCGag-GCCGCGGGCgcgcgccGGCCGacgGCGCg -3'
miRNA:   3'- -GGCagaUGGUGUUCGa------CCGGUa--CGCG- -5'
29543 5' -54.5 NC_006151.1 + 130112 0.69 0.835766
Target:  5'- gCCGUgaaGCC-CGGGUucUGGCCGUGgGCg -3'
miRNA:   3'- -GGCAga-UGGuGUUCG--ACCGGUACgCG- -5'
29543 5' -54.5 NC_006151.1 + 129598 0.73 0.642524
Target:  5'- ---aCU-CCGCGAGCgGGCaCGUGCGCa -3'
miRNA:   3'- ggcaGAuGGUGUUCGaCCG-GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 129552 0.77 0.407493
Target:  5'- gCCGUCaACCGC-AGCUGGCgCAUGacgGCg -3'
miRNA:   3'- -GGCAGaUGGUGuUCGACCG-GUACg--CG- -5'
29543 5' -54.5 NC_006151.1 + 129432 0.67 0.893271
Target:  5'- aCGUCcgGCCcCAAGUgggcggggcgcacGGCCGUGgGCg -3'
miRNA:   3'- gGCAGa-UGGuGUUCGa------------CCGGUACgCG- -5'
29543 5' -54.5 NC_006151.1 + 129212 0.67 0.920543
Target:  5'- cCCGgggGCCGCcagcaggcAGCUGGCgCGggUGCGCc -3'
miRNA:   3'- -GGCagaUGGUGu-------UCGACCG-GU--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 129096 0.71 0.704178
Target:  5'- gCGUaguugCUGCgCACGAGCgccagGGCCGagGCGCg -3'
miRNA:   3'- gGCA-----GAUG-GUGUUCGa----CCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 128924 0.66 0.946259
Target:  5'- gUCGUCcgagcgcaccuccacGCC-CGAGCUGGCCuucagguaGCGCc -3'
miRNA:   3'- -GGCAGa--------------UGGuGUUCGACCGGua------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 128533 0.66 0.926086
Target:  5'- cCCGag-GCCAC-GGCgGGCCcgccgGCGCg -3'
miRNA:   3'- -GGCagaUGGUGuUCGaCCGGua---CGCG- -5'
29543 5' -54.5 NC_006151.1 + 128313 0.66 0.941248
Target:  5'- cCCGUCgucgaGCCAgCAcacguAGCcGGCCA-GCGUc -3'
miRNA:   3'- -GGCAGa----UGGU-GU-----UCGaCCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 126393 0.66 0.945816
Target:  5'- cCCGcgCUgcuggccaGCCGCGucggGGCgaUGGCCAcGCGCc -3'
miRNA:   3'- -GGCa-GA--------UGGUGU----UCG--ACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 125467 0.72 0.694004
Target:  5'- gCCGUg-GCCACGGccgcGCUcGGCCA-GCGCg -3'
miRNA:   3'- -GGCAgaUGGUGUU----CGA-CCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 125304 0.66 0.926086
Target:  5'- gCGcaUC-ACCACGGGCUcGGCgGaguuUGCGCg -3'
miRNA:   3'- gGC--AGaUGGUGUUCGA-CCGgU----ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 124053 0.7 0.773119
Target:  5'- aCGgcgACCugGAcGCgcggacGGCCGUGCGCg -3'
miRNA:   3'- gGCagaUGGugUU-CGa-----CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 123817 0.66 0.92982
Target:  5'- aCGUCUuuggccugcuccacACCACGcugcAGCUGcgcggggcGCCGUcGCGCu -3'
miRNA:   3'- gGCAGA--------------UGGUGU----UCGAC--------CGGUA-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 123114 0.66 0.936438
Target:  5'- gCGcUCgGCgGCGAGcCUGGCgcagugCGUGCGCg -3'
miRNA:   3'- gGC-AGaUGgUGUUC-GACCG------GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 122987 0.68 0.875011
Target:  5'- gCGUCgGCgACgAAGacgGGCCcgGCGCg -3'
miRNA:   3'- gGCAGaUGgUG-UUCga-CCGGuaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.