miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 105887 0.71 0.71429
Target:  5'- gCgGUCgGCgACAAGCUggcGGCCAUGCuguGCa -3'
miRNA:   3'- -GgCAGaUGgUGUUCGA---CCGGUACG---CG- -5'
29543 5' -54.5 NC_006151.1 + 105704 0.68 0.889195
Target:  5'- gCCGgcgCgGCCGCGcGCcucgacgGcGCCGUGCGCg -3'
miRNA:   3'- -GGCa--GaUGGUGUuCGa------C-CGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 105636 0.78 0.349342
Target:  5'- gCCGcCUACCGCGAGCUGcUCAcgcUGCGCc -3'
miRNA:   3'- -GGCaGAUGGUGUUCGACcGGU---ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 105489 0.69 0.835766
Target:  5'- gCCGg-UGCCGuCGAGgaGGaCGUGCGCg -3'
miRNA:   3'- -GGCagAUGGU-GUUCgaCCgGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 105148 0.66 0.931384
Target:  5'- gCGUCgacgGCCGCGGGCccaUGgacgaguucGCCGaGCGCa -3'
miRNA:   3'- gGCAGa---UGGUGUUCG---AC---------CGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 105057 0.69 0.835766
Target:  5'- gCCGUCgaggaggcGCC-CGAGCUGGaCGUGCa- -3'
miRNA:   3'- -GGCAGa-------UGGuGUUCGACCgGUACGcg -5'
29543 5' -54.5 NC_006151.1 + 104926 0.66 0.936438
Target:  5'- aCCG-CgacgggGCCcuCGAGCUGGCCAaccucaagaaccUGCuGCg -3'
miRNA:   3'- -GGCaGa-----UGGu-GUUCGACCGGU------------ACG-CG- -5'
29543 5' -54.5 NC_006151.1 + 104802 0.67 0.902453
Target:  5'- cUCGUgcGCCGCGAcCUGGCgGcgGCGCg -3'
miRNA:   3'- -GGCAgaUGGUGUUcGACCGgUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 104614 0.67 0.908725
Target:  5'- gCCGagaUCUGCCGCGcgcucgAGgaGGUgacguaCGUGCGCg -3'
miRNA:   3'- -GGC---AGAUGGUGU------UCgaCCG------GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 104539 0.71 0.72433
Target:  5'- cCCGagUACgAggcCGAGCUGGCCGcccuggGCGCg -3'
miRNA:   3'- -GGCagAUGgU---GUUCGACCGGUa-----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 104212 0.66 0.950144
Target:  5'- aCCGUg-ACCACGGcGCUGgacGCCGUGUucGCc -3'
miRNA:   3'- -GGCAgaUGGUGUU-CGAC---CGGUACG--CG- -5'
29543 5' -54.5 NC_006151.1 + 103507 0.71 0.722328
Target:  5'- gCG-CUACCGCGAGCUGcugacguccgacCCcgGCGCg -3'
miRNA:   3'- gGCaGAUGGUGUUCGACc-----------GGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 103260 0.66 0.931384
Target:  5'- uCCG-C-GCCAUggGC-GGCCAcGUGCu -3'
miRNA:   3'- -GGCaGaUGGUGuuCGaCCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 103032 0.67 0.920543
Target:  5'- gCC-UCgggGCCugGuucgcgcuGCUGGCCGagGCGCa -3'
miRNA:   3'- -GGcAGa--UGGugUu-------CGACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 102381 0.66 0.936438
Target:  5'- cCCGUg-GCCAagcuggcGCUGGUCGcgGCGCg -3'
miRNA:   3'- -GGCAgaUGGUguu----CGACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 102217 0.67 0.920543
Target:  5'- cCCG-CacCCACGGGgaGGCgcCGUGCGCc -3'
miRNA:   3'- -GGCaGauGGUGUUCgaCCG--GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 102033 0.7 0.800922
Target:  5'- gCCGUCcgggAgCugGAGCUGGCCccGCu- -3'
miRNA:   3'- -GGCAGa---UgGugUUCGACCGGuaCGcg -5'
29543 5' -54.5 NC_006151.1 + 101498 0.68 0.882217
Target:  5'- aCGUCUucgacccgcacgGCCACGGGCagaucacccaGGCCuucgugGCGCg -3'
miRNA:   3'- gGCAGA------------UGGUGUUCGa---------CCGGua----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 100878 0.71 0.72433
Target:  5'- gCCGUgaACCugGAgguGCUGcGCCGcgGCGCg -3'
miRNA:   3'- -GGCAgaUGGugUU---CGAC-CGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 100684 0.66 0.941248
Target:  5'- cUCGUCgcgacgcuCCGCGAGacCUGGaCCGagGCGCg -3'
miRNA:   3'- -GGCAGau------GGUGUUC--GACC-GGUa-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.