miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 100279 0.71 0.753924
Target:  5'- uUCGUCUuCCGCGGGCgcacGGCCuccgucuucGCGCc -3'
miRNA:   3'- -GGCAGAuGGUGUUCGa---CCGGua-------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 100216 0.7 0.800922
Target:  5'- gCCacg-GCCGCGGGCgccgUGGCCGaGCGCg -3'
miRNA:   3'- -GGcagaUGGUGUUCG----ACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 100031 0.72 0.663202
Target:  5'- aCGUCgaggcgcucGCgCACGAGCUgcacggGGUCGUGCGCg -3'
miRNA:   3'- gGCAGa--------UG-GUGUUCGA------CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 99956 0.66 0.950144
Target:  5'- gCGgCUACCGCAccaAGCUcGCC--GCGCu -3'
miRNA:   3'- gGCaGAUGGUGU---UCGAcCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 99599 0.66 0.945816
Target:  5'- gCCGagcGCCGCGccgGGCUGGCgCAcaGCGCc -3'
miRNA:   3'- -GGCagaUGGUGU---UCGACCG-GUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 99402 0.71 0.734288
Target:  5'- aCGg--GCC-CGGGCUGGacuaCGUGCGCg -3'
miRNA:   3'- gGCagaUGGuGUUCGACCg---GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 98805 0.75 0.50022
Target:  5'- aCUGggcgCUGCCGCuGGCguUGGCgGUGCGCc -3'
miRNA:   3'- -GGCa---GAUGGUGuUCG--ACCGgUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 98337 0.67 0.920543
Target:  5'- gCCG-CggGCCGCGAGaCgcccgcGGgCGUGCGCg -3'
miRNA:   3'- -GGCaGa-UGGUGUUC-Ga-----CCgGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 98020 0.66 0.950144
Target:  5'- gCCGgccagguCCGCGGGgUGGCgCA-GCGCg -3'
miRNA:   3'- -GGCagau---GGUGUUCgACCG-GUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 97788 0.68 0.889195
Target:  5'- aCgGUCgcgaaGCgCuCAGGCgcgcGGCCGUGCGCc -3'
miRNA:   3'- -GgCAGa----UG-GuGUUCGa---CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 97670 0.66 0.945816
Target:  5'- gCCGcggGCCACGcacgugacGCUGGCCAgccggucuUGCGUc -3'
miRNA:   3'- -GGCagaUGGUGUu-------CGACCGGU--------ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 97161 0.74 0.570305
Target:  5'- aCCGa--GCCGCAGcGCUcGGCCcgGCGCa -3'
miRNA:   3'- -GGCagaUGGUGUU-CGA-CCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 94777 0.67 0.908725
Target:  5'- gCGUCU-CCAUGAGC-GGCagguugggGCGCa -3'
miRNA:   3'- gGCAGAuGGUGUUCGaCCGgua-----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 94299 0.71 0.744156
Target:  5'- uCCGUCUcgaGCCAgcGGUUGGCCA--CGCu -3'
miRNA:   3'- -GGCAGA---UGGUguUCGACCGGUacGCG- -5'
29543 5' -54.5 NC_006151.1 + 92149 0.69 0.844023
Target:  5'- gCGcCaagGCCAUcauGGCcgcGGCCGUGCGCg -3'
miRNA:   3'- gGCaGa--UGGUGu--UCGa--CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 92047 0.69 0.844023
Target:  5'- cCCG-CUGCCu---GCUGcGCCugcUGCGCa -3'
miRNA:   3'- -GGCaGAUGGuguuCGAC-CGGu--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 91660 0.73 0.632168
Target:  5'- cCCGUCguggAUCACcuGCgccgGGUgGUGCGCg -3'
miRNA:   3'- -GGCAGa---UGGUGuuCGa---CCGgUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 91121 0.67 0.920543
Target:  5'- cCCuUCgccacgGCgGCGAGCuUGGCCAccuggggGCGCg -3'
miRNA:   3'- -GGcAGa-----UGgUGUUCG-ACCGGUa------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 90959 0.66 0.935943
Target:  5'- uCCGUCgcgccgACCGCGucGacgcccuggcgccGCUGGCUG-GCGCg -3'
miRNA:   3'- -GGCAGa-----UGGUGU--U-------------CGACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 90229 0.71 0.734288
Target:  5'- gCCGag-AUCGCGucgcGGCUGGCCA-GCGCc -3'
miRNA:   3'- -GGCagaUGGUGU----UCGACCGGUaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.