miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 98020 0.66 0.950144
Target:  5'- gCCGgccagguCCGCGGGgUGGCgCA-GCGCg -3'
miRNA:   3'- -GGCagau---GGUGUUCgACCG-GUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 99956 0.66 0.950144
Target:  5'- gCGgCUACCGCAccaAGCUcGCC--GCGCu -3'
miRNA:   3'- gGCaGAUGGUGU---UCGAcCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 141635 0.66 0.950144
Target:  5'- gUCG-CUGCCGCGgcGGCgcggcggGGCCccGCGg -3'
miRNA:   3'- -GGCaGAUGGUGU--UCGa------CCGGuaCGCg -5'
29543 5' -54.5 NC_006151.1 + 32561 0.66 0.950144
Target:  5'- cCCGUCU-CC-CGGGCacccgcGGCCggGCGg -3'
miRNA:   3'- -GGCAGAuGGuGUUCGa-----CCGGuaCGCg -5'
29543 5' -54.5 NC_006151.1 + 104212 0.66 0.950144
Target:  5'- aCCGUg-ACCACGGcGCUGgacGCCGUGUucGCc -3'
miRNA:   3'- -GGCAgaUGGUGUU-CGAC---CGGUACG--CG- -5'
29543 5' -54.5 NC_006151.1 + 106517 0.66 0.943104
Target:  5'- gCCGU--GCCggGCGcGCUGGCCAccuucaccgugcugGCGCg -3'
miRNA:   3'- -GGCAgaUGG--UGUuCGACCGGUa-------------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 2164 0.66 0.941248
Target:  5'- cCCGUCcucGCCG-GGGCcGGCCccgGCGCc -3'
miRNA:   3'- -GGCAGa--UGGUgUUCGaCCGGua-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 61454 0.66 0.936438
Target:  5'- gCGUCcGCCGCcauguGCgGGCC--GCGCa -3'
miRNA:   3'- gGCAGaUGGUGuu---CGaCCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 85346 0.66 0.936438
Target:  5'- gCGUgCUcGCCGC--GCUGGCgCGccUGCGCg -3'
miRNA:   3'- gGCA-GA-UGGUGuuCGACCG-GU--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 102381 0.66 0.936438
Target:  5'- cCCGUg-GCCAagcuggcGCUGGUCGcgGCGCg -3'
miRNA:   3'- -GGCAgaUGGUguu----CGACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 106179 0.66 0.936438
Target:  5'- gCGUCgcgcacccGCCGCugGAGCcGGCgGUGCGg -3'
miRNA:   3'- gGCAGa-------UGGUG--UUCGaCCGgUACGCg -5'
29543 5' -54.5 NC_006151.1 + 141684 0.66 0.936438
Target:  5'- aUGUCUGCCucccACGgcGGCUGGCgGcgGaCGCg -3'
miRNA:   3'- gGCAGAUGG----UGU--UCGACCGgUa-C-GCG- -5'
29543 5' -54.5 NC_006151.1 + 66354 0.66 0.938391
Target:  5'- gCGgcgCUACUacgcggaccucaagcGCAAGCgcgaGGCCAgugaGCGCg -3'
miRNA:   3'- gGCa--GAUGG---------------UGUUCGa---CCGGUa---CGCG- -5'
29543 5' -54.5 NC_006151.1 + 82585 0.66 0.940778
Target:  5'- gCCGUCgccgACCaggacgaACAGGgUGGgCccGCGCg -3'
miRNA:   3'- -GGCAGa---UGG-------UGUUCgACCgGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 50639 0.66 0.941248
Target:  5'- cUCGgCgacgGCCGCGGGCggacccGaGUCGUGCGCg -3'
miRNA:   3'- -GGCaGa---UGGUGUUCGa-----C-CGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 68002 0.66 0.941248
Target:  5'- gCCG-CgGCCACGGGCUcGGCg--GCGUc -3'
miRNA:   3'- -GGCaGaUGGUGUUCGA-CCGguaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 100684 0.66 0.941248
Target:  5'- cUCGUCgcgacgcuCCGCGAGacCUGGaCCGagGCGCg -3'
miRNA:   3'- -GGCAGau------GGUGUUC--GACC-GGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 2569 0.66 0.941248
Target:  5'- gCCGUCcACgguggggagCACGcGCUGGCgGUagGCGCg -3'
miRNA:   3'- -GGCAGaUG---------GUGUuCGACCGgUA--CGCG- -5'
29543 5' -54.5 NC_006151.1 + 81985 0.66 0.941248
Target:  5'- cCCGggCUgcACCACGgcggccagGGC-GGCCGcgUGCGCc -3'
miRNA:   3'- -GGCa-GA--UGGUGU--------UCGaCCGGU--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 128313 0.66 0.941248
Target:  5'- cCCGUCgucgaGCCAgCAcacguAGCcGGCCA-GCGUc -3'
miRNA:   3'- -GGCAGa----UGGU-GU-----UCGaCCGGUaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.