miRNA display CGI


Results 81 - 100 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 3912 0.66 0.931384
Target:  5'- gCCGggCUGCUcgggccagaGCGggGGCaGGCCggGCGCg -3'
miRNA:   3'- -GGCa-GAUGG---------UGU--UCGaCCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 68188 0.66 0.930865
Target:  5'- gCGUCguugagcaggACCACGacguggaAGC-GGCCcUGCGCc -3'
miRNA:   3'- gGCAGa---------UGGUGU-------UCGaCCGGuACGCG- -5'
29543 5' -54.5 NC_006151.1 + 123817 0.66 0.92982
Target:  5'- aCGUCUuuggccugcuccacACCACGcugcAGCUGcgcggggcGCCGUcGCGCu -3'
miRNA:   3'- gGCAGA--------------UGGUGU----UCGAC--------CGGUA-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 82119 0.66 0.92982
Target:  5'- gCGUgUAcacguggaagcggcCCGCGGGCgGGCCcgGCGg -3'
miRNA:   3'- gGCAgAU--------------GGUGUUCGaCCGGuaCGCg -5'
29543 5' -54.5 NC_006151.1 + 137656 0.66 0.926086
Target:  5'- cCCGUCccgGCgGaCGAGCgcccGCCGUGCGg -3'
miRNA:   3'- -GGCAGa--UGgU-GUUCGac--CGGUACGCg -5'
29543 5' -54.5 NC_006151.1 + 132843 0.66 0.926086
Target:  5'- aCGgCcACCACGGGCggccGGCCcgGgGCc -3'
miRNA:   3'- gGCaGaUGGUGUUCGa---CCGGuaCgCG- -5'
29543 5' -54.5 NC_006151.1 + 128533 0.66 0.926086
Target:  5'- cCCGag-GCCAC-GGCgGGCCcgccgGCGCg -3'
miRNA:   3'- -GGCagaUGGUGuUCGaCCGGua---CGCG- -5'
29543 5' -54.5 NC_006151.1 + 110885 0.66 0.931384
Target:  5'- gCUGgcgCU-CCACGAGgUGcuuGUCGUGCGCg -3'
miRNA:   3'- -GGCa--GAuGGUGUUCgAC---CGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 105148 0.66 0.931384
Target:  5'- gCGUCgacgGCCGCGGGCccaUGgacgaguucGCCGaGCGCa -3'
miRNA:   3'- gGCAGa---UGGUGUUCG---AC---------CGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 113332 0.66 0.931384
Target:  5'- cCCGUgCUGgCGCuggcGCUGaaGCaCGUGCGCg -3'
miRNA:   3'- -GGCA-GAUgGUGuu--CGAC--CG-GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 102381 0.66 0.936438
Target:  5'- cCCGUg-GCCAagcuggcGCUGGUCGcgGCGCg -3'
miRNA:   3'- -GGCAgaUGGUguu----CGACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 85346 0.66 0.936438
Target:  5'- gCGUgCUcGCCGC--GCUGGCgCGccUGCGCg -3'
miRNA:   3'- gGCA-GA-UGGUGuuCGACCG-GU--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 61454 0.66 0.936438
Target:  5'- gCGUCcGCCGCcauguGCgGGCC--GCGCa -3'
miRNA:   3'- gGCAGaUGGUGuu---CGaCCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 7103 0.66 0.936438
Target:  5'- cCCGcUCUGCgGCcaucUUGGCCGcgGCGCg -3'
miRNA:   3'- -GGC-AGAUGgUGuuc-GACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 123114 0.66 0.936438
Target:  5'- gCGcUCgGCgGCGAGcCUGGCgcagugCGUGCGCg -3'
miRNA:   3'- gGC-AGaUGgUGUUC-GACCG------GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 104926 0.66 0.936438
Target:  5'- aCCG-CgacgggGCCcuCGAGCUGGCCAaccucaagaaccUGCuGCg -3'
miRNA:   3'- -GGCaGa-----UGGu-GUUCGACCGGU------------ACG-CG- -5'
29543 5' -54.5 NC_006151.1 + 55060 0.66 0.936438
Target:  5'- cUCGgCgaggACCcgGCGGGCUcGGCCGcgGCGCg -3'
miRNA:   3'- -GGCaGa---UGG--UGUUCGA-CCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 90959 0.66 0.935943
Target:  5'- uCCGUCgcgccgACCGCGucGacgcccuggcgccGCUGGCUG-GCGCg -3'
miRNA:   3'- -GGCAGa-----UGGUGU--U-------------CGACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 137726 0.66 0.931384
Target:  5'- gCCGUC-GCCguACGcGgUGGCCG-GCGCc -3'
miRNA:   3'- -GGCAGaUGG--UGUuCgACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 116171 0.66 0.931384
Target:  5'- aCGUgaACaCGCGGaucuGCUGGCCGUcguagaugGCGCg -3'
miRNA:   3'- gGCAgaUG-GUGUU----CGACCGGUA--------CGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.