miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 128313 0.66 0.941248
Target:  5'- cCCGUCgucgaGCCAgCAcacguAGCcGGCCA-GCGUc -3'
miRNA:   3'- -GGCAGa----UGGU-GU-----UCGaCCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 2164 0.66 0.941248
Target:  5'- cCCGUCcucGCCG-GGGCcGGCCccgGCGCc -3'
miRNA:   3'- -GGCAGa--UGGUgUUCGaCCGGua-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 82585 0.66 0.940778
Target:  5'- gCCGUCgccgACCaggacgaACAGGgUGGgCccGCGCg -3'
miRNA:   3'- -GGCAGa---UGG-------UGUUCgACCgGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 66354 0.66 0.938391
Target:  5'- gCGgcgCUACUacgcggaccucaagcGCAAGCgcgaGGCCAgugaGCGCg -3'
miRNA:   3'- gGCa--GAUGG---------------UGUUCGa---CCGGUa---CGCG- -5'
29543 5' -54.5 NC_006151.1 + 55060 0.66 0.936438
Target:  5'- cUCGgCgaggACCcgGCGGGCUcGGCCGcgGCGCg -3'
miRNA:   3'- -GGCaGa---UGG--UGUUCGA-CCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 104926 0.66 0.936438
Target:  5'- aCCG-CgacgggGCCcuCGAGCUGGCCAaccucaagaaccUGCuGCg -3'
miRNA:   3'- -GGCaGa-----UGGu-GUUCGACCGGU------------ACG-CG- -5'
29543 5' -54.5 NC_006151.1 + 123114 0.66 0.936438
Target:  5'- gCGcUCgGCgGCGAGcCUGGCgcagugCGUGCGCg -3'
miRNA:   3'- gGC-AGaUGgUGUUC-GACCG------GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 7103 0.66 0.936438
Target:  5'- cCCGcUCUGCgGCcaucUUGGCCGcgGCGCg -3'
miRNA:   3'- -GGC-AGAUGgUGuuc-GACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 61454 0.66 0.936438
Target:  5'- gCGUCcGCCGCcauguGCgGGCC--GCGCa -3'
miRNA:   3'- gGCAGaUGGUGuu---CGaCCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 85346 0.66 0.936438
Target:  5'- gCGUgCUcGCCGC--GCUGGCgCGccUGCGCg -3'
miRNA:   3'- gGCA-GA-UGGUGuuCGACCG-GU--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 102381 0.66 0.936438
Target:  5'- cCCGUg-GCCAagcuggcGCUGGUCGcgGCGCg -3'
miRNA:   3'- -GGCAgaUGGUguu----CGACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 106179 0.66 0.936438
Target:  5'- gCGUCgcgcacccGCCGCugGAGCcGGCgGUGCGg -3'
miRNA:   3'- gGCAGa-------UGGUG--UUCGaCCGgUACGCg -5'
29543 5' -54.5 NC_006151.1 + 141684 0.66 0.936438
Target:  5'- aUGUCUGCCucccACGgcGGCUGGCgGcgGaCGCg -3'
miRNA:   3'- gGCAGAUGG----UGU--UCGACCGgUa-C-GCG- -5'
29543 5' -54.5 NC_006151.1 + 90959 0.66 0.935943
Target:  5'- uCCGUCgcgccgACCGCGucGacgcccuggcgccGCUGGCUG-GCGCg -3'
miRNA:   3'- -GGCAGa-----UGGUGU--U-------------CGACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 103260 0.66 0.931384
Target:  5'- uCCG-C-GCCAUggGC-GGCCAcGUGCu -3'
miRNA:   3'- -GGCaGaUGGUGuuCGaCCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 110885 0.66 0.931384
Target:  5'- gCUGgcgCU-CCACGAGgUGcuuGUCGUGCGCg -3'
miRNA:   3'- -GGCa--GAuGGUGUUCgAC---CGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 105148 0.66 0.931384
Target:  5'- gCGUCgacgGCCGCGGGCccaUGgacgaguucGCCGaGCGCa -3'
miRNA:   3'- gGCAGa---UGGUGUUCG---AC---------CGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 113332 0.66 0.931384
Target:  5'- cCCGUgCUGgCGCuggcGCUGaaGCaCGUGCGCg -3'
miRNA:   3'- -GGCA-GAUgGUGuu--CGAC--CG-GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 116171 0.66 0.931384
Target:  5'- aCGUgaACaCGCGGaucuGCUGGCCGUcguagaugGCGCg -3'
miRNA:   3'- gGCAgaUG-GUGUU----CGACCGGUA--------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 64955 0.66 0.931384
Target:  5'- gCCG-C-GCUGCGGGCgcaGGCCGaGCGCc -3'
miRNA:   3'- -GGCaGaUGGUGUUCGa--CCGGUaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.