Results 21 - 40 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29544 | 3' | -59.6 | NC_006151.1 | + | 18558 | 0.66 | 0.74139 |
Target: 5'- gGCCGCGAGGCCgCcCG-GCGgCGGGa-- -3' miRNA: 3'- -CGGUGCUUCGG-GaGCuCGU-GCCCgag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 36259 | 0.66 | 0.74139 |
Target: 5'- gGCCGCcGGGUCCcccggUCGGGCucuccaucaGGGCUCc -3' miRNA: 3'- -CGGUGcUUCGGG-----AGCUCGug-------CCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 2626 | 0.66 | 0.760302 |
Target: 5'- gGUC-CGggGCCC---GGCGCGGGUgcUCa -3' miRNA: 3'- -CGGuGCuuCGGGagcUCGUGCCCG--AG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 24458 | 0.66 | 0.760302 |
Target: 5'- gGUCGCGcgcGAGCaCCUCGGGgGCGuuGGuCUCg -3' miRNA: 3'- -CGGUGC---UUCG-GGAGCUCgUGC--CC-GAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 74601 | 0.66 | 0.760302 |
Target: 5'- cGCCgAUGAGGCgCCgcagggCGuGCACGuGCUCc -3' miRNA: 3'- -CGG-UGCUUCG-GGa-----GCuCGUGCcCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 88779 | 0.66 | 0.760302 |
Target: 5'- gGUCGCGcgcucGCCCUCGAcGacgACGGGCg- -3' miRNA: 3'- -CGGUGCuu---CGGGAGCU-Cg--UGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 101515 | 0.66 | 0.760302 |
Target: 5'- gGCCACGGgcagaucacccaGGCCUUCGuGGCGCGccugcgcccGGCg- -3' miRNA: 3'- -CGGUGCU------------UCGGGAGC-UCGUGC---------CCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 83429 | 0.66 | 0.760302 |
Target: 5'- cGCCGgGggGCuCCcCGGGCAgCGuGGC-Cg -3' miRNA: 3'- -CGGUgCuuCG-GGaGCUCGU-GC-CCGaG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 82711 | 0.66 | 0.760302 |
Target: 5'- gGCCAgGAGGCCCgCGAGgguCAgGaGGCg- -3' miRNA: 3'- -CGGUgCUUCGGGaGCUC---GUgC-CCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 92735 | 0.66 | 0.760302 |
Target: 5'- gGCCAUGcucacGCCggCGcGGCACGGGCa- -3' miRNA: 3'- -CGGUGCuu---CGGgaGC-UCGUGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 135035 | 0.66 | 0.750896 |
Target: 5'- gGCCGCGucGUCCUCGGG-GCGGuccccCUCc -3' miRNA: 3'- -CGGUGCuuCGGGAGCUCgUGCCc----GAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 83180 | 0.66 | 0.750896 |
Target: 5'- cGUCGCGcgggcggcaGAGCUCgUUGAGCGCGaGGCa- -3' miRNA: 3'- -CGGUGC---------UUCGGG-AGCUCGUGC-CCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 78222 | 0.66 | 0.74139 |
Target: 5'- nCCACGucGCUCaCGGGCGCGcagcGGUUCg -3' miRNA: 3'- cGGUGCuuCGGGaGCUCGUGC----CCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 117493 | 0.66 | 0.74139 |
Target: 5'- -aCACGuggAAGCgCUCGaAGCGCGGaCUCa -3' miRNA: 3'- cgGUGC---UUCGgGAGC-UCGUGCCcGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 121890 | 0.66 | 0.74139 |
Target: 5'- cGCUGCGccuGGCgCUCGcguacGCGCGGGC-Cg -3' miRNA: 3'- -CGGUGCu--UCGgGAGCu----CGUGCCCGaG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 131539 | 0.66 | 0.74139 |
Target: 5'- uGCUcuuGCG-AGCgCCUCGGgcgccGCACGGGCc- -3' miRNA: 3'- -CGG---UGCuUCG-GGAGCU-----CGUGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 86099 | 0.66 | 0.74139 |
Target: 5'- cGCCAUGggGCCCgu--GUACGuguccGGCUa -3' miRNA: 3'- -CGGUGCuuCGGGagcuCGUGC-----CCGAg -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 106654 | 0.66 | 0.74139 |
Target: 5'- cGCCGCGgcGCaCgugcgCGAGgcCGCGGcGCUCg -3' miRNA: 3'- -CGGUGCuuCGgGa----GCUC--GUGCC-CGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 38153 | 0.66 | 0.74995 |
Target: 5'- gGCCGCGGAcucugucGCCCUCGucgcccGCAcCGuGGCg- -3' miRNA: 3'- -CGGUGCUU-------CGGGAGCu-----CGU-GC-CCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 81358 | 0.66 | 0.750896 |
Target: 5'- cGCC-CGggGCCCcggCGGGCGCcaGCg- -3' miRNA: 3'- -CGGuGCuuCGGGa--GCUCGUGccCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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