miRNA display CGI


Results 41 - 60 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 89933 0.66 0.74139
Target:  5'- aGCCGCGccccAGGUCCgCGGGCGCGGcCa- -3'
miRNA:   3'- -CGGUGC----UUCGGGaGCUCGUGCCcGag -5'
29544 3' -59.6 NC_006151.1 + 18558 0.66 0.74139
Target:  5'- gGCCGCGAGGCCgCcCG-GCGgCGGGa-- -3'
miRNA:   3'- -CGGUGCUUCGG-GaGCuCGU-GCCCgag -5'
29544 3' -59.6 NC_006151.1 + 36259 0.66 0.74139
Target:  5'- gGCCGCcGGGUCCcccggUCGGGCucuccaucaGGGCUCc -3'
miRNA:   3'- -CGGUGcUUCGGG-----AGCUCGug-------CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 78222 0.66 0.74139
Target:  5'- nCCACGucGCUCaCGGGCGCGcagcGGUUCg -3'
miRNA:   3'- cGGUGCuuCGGGaGCUCGUGC----CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 117493 0.66 0.74139
Target:  5'- -aCACGuggAAGCgCUCGaAGCGCGGaCUCa -3'
miRNA:   3'- cgGUGC---UUCGgGAGC-UCGUGCCcGAG- -5'
29544 3' -59.6 NC_006151.1 + 121890 0.66 0.74139
Target:  5'- cGCUGCGccuGGCgCUCGcguacGCGCGGGC-Cg -3'
miRNA:   3'- -CGGUGCu--UCGgGAGCu----CGUGCCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 131539 0.66 0.74139
Target:  5'- uGCUcuuGCG-AGCgCCUCGGgcgccGCACGGGCc- -3'
miRNA:   3'- -CGG---UGCuUCG-GGAGCU-----CGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 86099 0.66 0.74139
Target:  5'- cGCCAUGggGCCCgu--GUACGuguccGGCUa -3'
miRNA:   3'- -CGGUGCuuCGGGagcuCGUGC-----CCGAg -5'
29544 3' -59.6 NC_006151.1 + 106654 0.66 0.74139
Target:  5'- cGCCGCGgcGCaCgugcgCGAGgcCGCGGcGCUCg -3'
miRNA:   3'- -CGGUGCuuCGgGa----GCUC--GUGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 137118 0.67 0.692655
Target:  5'- cGCCugGggGCgCgCGAcgGCGCGGcGCg- -3'
miRNA:   3'- -CGGugCuuCGgGaGCU--CGUGCC-CGag -5'
29544 3' -59.6 NC_006151.1 + 64194 0.67 0.692655
Target:  5'- cCCGCGAucGCCC-CGGGCAgguccggcgUGGGCg- -3'
miRNA:   3'- cGGUGCUu-CGGGaGCUCGU---------GCCCGag -5'
29544 3' -59.6 NC_006151.1 + 55519 0.67 0.692655
Target:  5'- gGCCACGAGGUCaUCGAcaucacgcgcGcCAUGGGCg- -3'
miRNA:   3'- -CGGUGCUUCGGgAGCU----------C-GUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 60172 0.67 0.692655
Target:  5'- aGCC-CG-AGCCCaCGAcgugguucagcaGCACGGGCg- -3'
miRNA:   3'- -CGGuGCuUCGGGaGCU------------CGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 105070 0.67 0.692655
Target:  5'- cGCC-CGAgcuggacgugcaGGCCgUCGAGUggcugcaccagGCGcGGCUCa -3'
miRNA:   3'- -CGGuGCU------------UCGGgAGCUCG-----------UGC-CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 63890 0.67 0.699576
Target:  5'- cGCguCGggGCgCUCGAGCaggcgcgcguacgcGCgcgccgugGGGCUCg -3'
miRNA:   3'- -CGguGCuuCGgGAGCUCG--------------UG--------CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 121207 0.67 0.702534
Target:  5'- cGCgCACGcAGCaCCUgGAGCccgacgacugGCGGGCg- -3'
miRNA:   3'- -CG-GUGCuUCG-GGAgCUCG----------UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 5337 0.67 0.702534
Target:  5'- gGCCGCGGcggagggcGCCCUCuccGGCGCGGcGC-Cg -3'
miRNA:   3'- -CGGUGCUu-------CGGGAGc--UCGUGCC-CGaG- -5'
29544 3' -59.6 NC_006151.1 + 142141 0.67 0.702534
Target:  5'- cGCC-CGAuGCCUgCGccGGCGCaggGGGCUCg -3'
miRNA:   3'- -CGGuGCUuCGGGaGC--UCGUG---CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 88255 0.67 0.70647
Target:  5'- aCgGCGAAGCCCUCGAcgaaGCGCaccgagaccgccgccGGGUg- -3'
miRNA:   3'- cGgUGCUUCGGGAGCU----CGUG---------------CCCGag -5'
29544 3' -59.6 NC_006151.1 + 73864 0.67 0.692655
Target:  5'- cGCCGgguaGAAGaaggccCCCUCGAGCAgcguggcgucguUGGGCUg -3'
miRNA:   3'- -CGGUg---CUUC------GGGAGCUCGU------------GCCCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.