miRNA display CGI


Results 81 - 100 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 134259 0.67 0.686704
Target:  5'- cGCgGCGAggugcaggcgauuguAGCCC-CGGGCcgcccACGGGCg- -3'
miRNA:   3'- -CGgUGCU---------------UCGGGaGCUCG-----UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 142876 0.67 0.686704
Target:  5'- gGCCcccagcgcacccaagGCGAA-CCCUCGcgggcgccaccGGCGCGGGCa- -3'
miRNA:   3'- -CGG---------------UGCUUcGGGAGC-----------UCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 35149 0.67 0.691665
Target:  5'- cGCCGCGGccaagauGGCCgCagagCGGGC-CGGGCa- -3'
miRNA:   3'- -CGGUGCU-------UCGG-Ga---GCUCGuGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 73864 0.67 0.692655
Target:  5'- cGCCGgguaGAAGaaggccCCCUCGAGCAgcguggcgucguUGGGCUg -3'
miRNA:   3'- -CGGUg---CUUC------GGGAGCUCGU------------GCCCGAg -5'
29544 3' -59.6 NC_006151.1 + 60172 0.67 0.692655
Target:  5'- aGCC-CG-AGCCCaCGAcgugguucagcaGCACGGGCg- -3'
miRNA:   3'- -CGGuGCuUCGGGaGCU------------CGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 114167 0.68 0.63868
Target:  5'- aCCGCGcGGCCCUCGuGCugGccuacgugcagcaGCUCa -3'
miRNA:   3'- cGGUGCuUCGGGAGCuCGugCc------------CGAG- -5'
29544 3' -59.6 NC_006151.1 + 97436 0.68 0.636671
Target:  5'- gGCCAgGAggaAGCUgagggcgucgccgagCUCGGGCAgGcGGCUCa -3'
miRNA:   3'- -CGGUgCU---UCGG---------------GAGCUCGUgC-CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 100221 0.68 0.632652
Target:  5'- gGCCGCGGGcGCCgUggcCGAGCGCGuGGUg- -3'
miRNA:   3'- -CGGUGCUU-CGGgA---GCUCGUGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 57477 0.68 0.632652
Target:  5'- cGCCGCGgcGgCCUCGcaggcgacgcGCACGcGCUCg -3'
miRNA:   3'- -CGGUGCuuCgGGAGCu---------CGUGCcCGAG- -5'
29544 3' -59.6 NC_006151.1 + 31232 0.68 0.632652
Target:  5'- gGCCGgccGGCCCggCGAGCgaGCGGGCg- -3'
miRNA:   3'- -CGGUgcuUCGGGa-GCUCG--UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 63440 0.68 0.632652
Target:  5'- cGCacaGCGAGGCCaggUCGAGCGucCGGuucuGCUCg -3'
miRNA:   3'- -CGg--UGCUUCGGg--AGCUCGU--GCC----CGAG- -5'
29544 3' -59.6 NC_006151.1 + 64056 0.68 0.642699
Target:  5'- uCCAgCGAGGCCC-CGAccaugccgguGCGCGGGUcCa -3'
miRNA:   3'- cGGU-GCUUCGGGaGCU----------CGUGCCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 98547 0.68 0.642699
Target:  5'- aCCACGGccGCCCUCaccgaGGC-CGGGCUg -3'
miRNA:   3'- cGGUGCUu-CGGGAGc----UCGuGCCCGAg -5'
29544 3' -59.6 NC_006151.1 + 21555 0.68 0.642699
Target:  5'- gGCCugGGccucggcgAGCCCgcCGAgggccGCGCGGGgUCg -3'
miRNA:   3'- -CGGugCU--------UCGGGa-GCU-----CGUGCCCgAG- -5'
29544 3' -59.6 NC_006151.1 + 60882 0.68 0.642699
Target:  5'- aGCCGCGcAGCagCCgcgCGAGCA-GGGCg- -3'
miRNA:   3'- -CGGUGCuUCG--GGa--GCUCGUgCCCGag -5'
29544 3' -59.6 NC_006151.1 + 76294 0.68 0.642699
Target:  5'- aGCgGCGAucgaGGCgCUUGAucauguaguuguGCACGGGCUg -3'
miRNA:   3'- -CGgUGCU----UCGgGAGCU------------CGUGCCCGAg -5'
29544 3' -59.6 NC_006151.1 + 134761 0.68 0.642699
Target:  5'- cGCgCGCGggGCCCgcggcuUCGGcucCACGGGCc- -3'
miRNA:   3'- -CG-GUGCuuCGGG------AGCUc--GUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 65936 0.68 0.642699
Target:  5'- cGCCGCc-GGCCCaguccucgUCGAGCGCGGccGCgUCg -3'
miRNA:   3'- -CGGUGcuUCGGG--------AGCUCGUGCC--CG-AG- -5'
29544 3' -59.6 NC_006151.1 + 141132 0.68 0.642699
Target:  5'- aGCCccccccagAgGAAGCCCaCGAGCAccauCGGGCg- -3'
miRNA:   3'- -CGG--------UgCUUCGGGaGCUCGU----GCCCGag -5'
29544 3' -59.6 NC_006151.1 + 73020 0.68 0.626623
Target:  5'- cGCUGCGAGGCCCagggauuggCGGuggcgcgguggggguGCGCGGGgUCc -3'
miRNA:   3'- -CGGUGCUUCGGGa--------GCU---------------CGUGCCCgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.