miRNA display CGI


Results 121 - 140 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 52376 0.69 0.543051
Target:  5'- cGCCccCGggGCCCgcggGGGCGgCGGGCg- -3'
miRNA:   3'- -CGGu-GCuuCGGGag--CUCGU-GCCCGag -5'
29544 3' -59.6 NC_006151.1 + 106383 0.69 0.543051
Target:  5'- cGCCGCGgcGCCCgcuGcGCgACGGGCa- -3'
miRNA:   3'- -CGGUGCuuCGGGag-CuCG-UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 103274 0.69 0.543051
Target:  5'- gGCCACGugcuGAGCCaggagaCGcGCGCGcGGCUCg -3'
miRNA:   3'- -CGGUGC----UUCGGga----GCuCGUGC-CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 135718 0.69 0.543051
Target:  5'- uGCuCACGGgcaggAGCCCUCGGGgGCGGuCUa -3'
miRNA:   3'- -CG-GUGCU-----UCGGGAGCUCgUGCCcGAg -5'
29544 3' -59.6 NC_006151.1 + 132574 0.69 0.543051
Target:  5'- uCCACGGccGGgaCUCGcGGCAUGGGCUCc -3'
miRNA:   3'- cGGUGCU--UCggGAGC-UCGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 76047 0.69 0.543051
Target:  5'- uCCGCGAgccGGCCCUCGuagAGCGugaaGGGCg- -3'
miRNA:   3'- cGGUGCU---UCGGGAGC---UCGUg---CCCGag -5'
29544 3' -59.6 NC_006151.1 + 57259 0.69 0.561722
Target:  5'- uCCGCGcGGCCCUCGAcggccucGCGCagcaGGGCg- -3'
miRNA:   3'- cGGUGCuUCGGGAGCU-------CGUG----CCCGag -5'
29544 3' -59.6 NC_006151.1 + 20811 0.69 0.56271
Target:  5'- aGCCGCgGAAGgCCUCGugguGCACgcggGGGCa- -3'
miRNA:   3'- -CGGUG-CUUCgGGAGCu---CGUG----CCCGag -5'
29544 3' -59.6 NC_006151.1 + 714 0.69 0.572612
Target:  5'- cGUCGCaccgGggGUCCgCGGGCGgGGGCUUc -3'
miRNA:   3'- -CGGUG----CuuCGGGaGCUCGUgCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 130266 0.69 0.582555
Target:  5'- gGCCggcGCGcGGCCC-CGAGgcCGCGGGCg- -3'
miRNA:   3'- -CGG---UGCuUCGGGaGCUC--GUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 118220 0.69 0.582555
Target:  5'- gGUgGCGGGcGCCCggaccacCGGGCucggcgGCGGGCUCa -3'
miRNA:   3'- -CGgUGCUU-CGGGa------GCUCG------UGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 78194 0.69 0.582555
Target:  5'- cGCgGCGGAcCCCuucuUCGGG-ACGGGCUCc -3'
miRNA:   3'- -CGgUGCUUcGGG----AGCUCgUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 74773 0.69 0.582555
Target:  5'- cGCCACG-AGCCgCgCGAGCGCGcagaagguGcGCUCg -3'
miRNA:   3'- -CGGUGCuUCGG-GaGCUCGUGC--------C-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 77073 0.69 0.582555
Target:  5'- gGCCAgGAGGCUCaccacgugCGAGCugaagcGCGGGCg- -3'
miRNA:   3'- -CGGUgCUUCGGGa-------GCUCG------UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 67247 0.69 0.582555
Target:  5'- gGCCACGGAGCCCguguUCGAGgagaucCACGcGCg- -3'
miRNA:   3'- -CGGUGCUUCGGG----AGCUC------GUGCcCGag -5'
29544 3' -59.6 NC_006151.1 + 66765 0.69 0.572612
Target:  5'- cGCCGCGAcggccGCCCUCGGG-ACGgcGGCg- -3'
miRNA:   3'- -CGGUGCUu----CGGGAGCUCgUGC--CCGag -5'
29544 3' -59.6 NC_006151.1 + 99545 0.69 0.572612
Target:  5'- cCCACGGAGCacgUGGGCGCGGcGCg- -3'
miRNA:   3'- cGGUGCUUCGggaGCUCGUGCC-CGag -5'
29544 3' -59.6 NC_006151.1 + 18472 0.69 0.572612
Target:  5'- cGCCGuCGuaguAGUCCUCGuGCGUGGGCa- -3'
miRNA:   3'- -CGGU-GCu---UCGGGAGCuCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 65682 0.69 0.572612
Target:  5'- aCgGCGAGGUCCccgucCGGGCGCGGGaUCa -3'
miRNA:   3'- cGgUGCUUCGGGa----GCUCGUGCCCgAG- -5'
29544 3' -59.6 NC_006151.1 + 83556 0.7 0.523623
Target:  5'- cGUCAucuCGGgcgGGCCCUCGAcCGCGGGCcCg -3'
miRNA:   3'- -CGGU---GCU---UCGGGAGCUcGUGCCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.