miRNA display CGI


Results 21 - 40 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 90740 0.75 0.278759
Target:  5'- gGCgGCGgcGCCCUCGggGGCGgCGGGCa- -3'
miRNA:   3'- -CGgUGCuuCGGGAGC--UCGU-GCCCGag -5'
29544 3' -59.6 NC_006151.1 + 103456 0.75 0.285256
Target:  5'- gGCCAC---GCCCgugcCGGGCACGGuGCUCg -3'
miRNA:   3'- -CGGUGcuuCGGGa---GCUCGUGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 130493 0.75 0.2655
Target:  5'- aGCgCGCGgcGCCacacgccgcgcguCUCGGGCGCGGGCgUCg -3'
miRNA:   3'- -CG-GUGCuuCGG-------------GAGCUCGUGCCCG-AG- -5'
29544 3' -59.6 NC_006151.1 + 99713 0.75 0.272381
Target:  5'- cCCAUGGAggcGCCgaCGAGCGCGGcGCUCg -3'
miRNA:   3'- cGGUGCUU---CGGgaGCUCGUGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 130399 0.75 0.259975
Target:  5'- gGCCAgCGccucGCCCgCGAGCGCGGGCg- -3'
miRNA:   3'- -CGGU-GCuu--CGGGaGCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 85398 0.75 0.278759
Target:  5'- cGCCaACGAGGUCgaCG-GCGCGGGCUUc -3'
miRNA:   3'- -CGG-UGCUUCGGgaGCuCGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 5081 0.75 0.285256
Target:  5'- gGCCGCGggGCCgCggCGGGCGCcGGCg- -3'
miRNA:   3'- -CGGUGCuuCGG-Ga-GCUCGUGcCCGag -5'
29544 3' -59.6 NC_006151.1 + 2386 0.75 0.253948
Target:  5'- gGCCGgcAGGCCCUCGGGgcCGCGGaGCUCg -3'
miRNA:   3'- -CGGUgcUUCGGGAGCUC--GUGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 99016 0.75 0.26861
Target:  5'- gGCCGuCGAggugcgcgucuccgcGGCCCUCGcGCACGGGgaCg -3'
miRNA:   3'- -CGGU-GCU---------------UCGGGAGCuCGUGCCCgaG- -5'
29544 3' -59.6 NC_006151.1 + 111318 0.74 0.291872
Target:  5'- gGCCGCGu-GCCC--GGGCACGGGCg- -3'
miRNA:   3'- -CGGUGCuuCGGGagCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 88864 0.74 0.291872
Target:  5'- cCCGCgGGAGCUC-CGGGCGCggGGGCUCg -3'
miRNA:   3'- cGGUG-CUUCGGGaGCUCGUG--CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 63167 0.74 0.319533
Target:  5'- cGgUACGggGCCUUgGGGCGCacggggccGGGCUCg -3'
miRNA:   3'- -CgGUGCuuCGGGAgCUCGUG--------CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 8304 0.74 0.312438
Target:  5'- cGCCGCGucccgccccGAGCCCcCGGggcGCGCGGGcCUCg -3'
miRNA:   3'- -CGGUGC---------UUCGGGaGCU---CGUGCCC-GAG- -5'
29544 3' -59.6 NC_006151.1 + 104160 0.74 0.312438
Target:  5'- cGCCGCGGAGCugcgccccgCCgcCGAGCGCGcGCUCg -3'
miRNA:   3'- -CGGUGCUUCG---------GGa-GCUCGUGCcCGAG- -5'
29544 3' -59.6 NC_006151.1 + 37536 0.74 0.318818
Target:  5'- -gCACGAGGCCCUCGuGCGCcucaucuacagcgGGGC-Cg -3'
miRNA:   3'- cgGUGCUUCGGGAGCuCGUG-------------CCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 45686 0.74 0.298608
Target:  5'- --aACGggGCCCUCGAcacCAUGGGCUg -3'
miRNA:   3'- cggUGCuuCGGGAGCUc--GUGCCCGAg -5'
29544 3' -59.6 NC_006151.1 + 120336 0.74 0.298608
Target:  5'- cGCCGCGcgcGCCCgCGuGGC-CGGGCUCg -3'
miRNA:   3'- -CGGUGCuu-CGGGaGC-UCGuGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 78325 0.73 0.326749
Target:  5'- gGCUggACGAGcGCCCcggggCGGGCGCGGGCg- -3'
miRNA:   3'- -CGG--UGCUU-CGGGa----GCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 24897 0.73 0.334084
Target:  5'- gGCCACGAagacgcGGCCCUcCGAgcccgacuGCAgGGGCUg -3'
miRNA:   3'- -CGGUGCU------UCGGGA-GCU--------CGUgCCCGAg -5'
29544 3' -59.6 NC_006151.1 + 142985 0.73 0.334084
Target:  5'- uGCCGCGGgugGGCCCgacCGcAGCAuCGcGGCUCg -3'
miRNA:   3'- -CGGUGCU---UCGGGa--GC-UCGU-GC-CCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.