miRNA display CGI


Results 61 - 80 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 59530 0.71 0.431243
Target:  5'- cGCCGCGugagGGCCCa-GcGCGCGGGCa- -3'
miRNA:   3'- -CGGUGCu---UCGGGagCuCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 141651 0.71 0.448982
Target:  5'- cGCgGCGggGCCC-----CGCGGGCUCg -3'
miRNA:   3'- -CGgUGCuuCGGGagcucGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 59371 0.71 0.467116
Target:  5'- cGCCGCGcGGCCgUCGucgcguccAGCACGuGGCa- -3'
miRNA:   3'- -CGGUGCuUCGGgAGC--------UCGUGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 125221 0.71 0.467116
Target:  5'- cCCGCGGccGCCCgUCGGGCcCGGcGCUCc -3'
miRNA:   3'- cGGUGCUu-CGGG-AGCUCGuGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 88066 0.71 0.464371
Target:  5'- aGCUGCGAgggcaGGCCCUCGAGgCggcagguguagucgACGGGCcCg -3'
miRNA:   3'- -CGGUGCU-----UCGGGAGCUC-G--------------UGCCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 129277 0.71 0.422529
Target:  5'- uCCACGAAGCgcggcgcguuCCUCGGGCGCGGcggaGCa- -3'
miRNA:   3'- cGGUGCUUCG----------GGAGCUCGUGCC----CGag -5'
29544 3' -59.6 NC_006151.1 + 3113 0.71 0.446295
Target:  5'- cGCCGCGGcgcgGGUCCcaggcCGGGCgcggggcgcccucgGCGGGCUCg -3'
miRNA:   3'- -CGGUGCU----UCGGGa----GCUCG--------------UGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 56948 0.71 0.422529
Target:  5'- cGCCgGCGcucAGCgCCUCGAGCGCGcGGUUg -3'
miRNA:   3'- -CGG-UGCu--UCG-GGAGCUCGUGC-CCGAg -5'
29544 3' -59.6 NC_006151.1 + 100651 0.71 0.440061
Target:  5'- cGCCGCGccGUCgaCGAGCGCGGcgugcuggcGCUCg -3'
miRNA:   3'- -CGGUGCuuCGGgaGCUCGUGCC---------CGAG- -5'
29544 3' -59.6 NC_006151.1 + 86736 0.71 0.431243
Target:  5'- cGCCGCGAGGCCggCGuGCGCGGaCa- -3'
miRNA:   3'- -CGGUGCUUCGGgaGCuCGUGCCcGag -5'
29544 3' -59.6 NC_006151.1 + 113964 0.71 0.470788
Target:  5'- gGCCGCGcAGCCCUCGgAcgaggugaccaccguGCGCGGcCUCu -3'
miRNA:   3'- -CGGUGCuUCGGGAGC-U---------------CGUGCCcGAG- -5'
29544 3' -59.6 NC_006151.1 + 3683 0.71 0.467116
Target:  5'- gGCgGCG-GGCCC-CGGGCGCGcGGCg- -3'
miRNA:   3'- -CGgUGCuUCGGGaGCUCGUGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 4217 0.7 0.476324
Target:  5'- gGCgGcCGggGCgCgggCGGGCGCGGGCa- -3'
miRNA:   3'- -CGgU-GCuuCGgGa--GCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 75139 0.7 0.476324
Target:  5'- gGCgGCGcGGCCCagcgCGGgcGCACGGGCaUCa -3'
miRNA:   3'- -CGgUGCuUCGGGa---GCU--CGUGCCCG-AG- -5'
29544 3' -59.6 NC_006151.1 + 73208 0.7 0.476324
Target:  5'- cCCGCGGgccaGGCCCgCGGGCACcugGGGCa- -3'
miRNA:   3'- cGGUGCU----UCGGGaGCUCGUG---CCCGag -5'
29544 3' -59.6 NC_006151.1 + 136361 0.7 0.495003
Target:  5'- cCCGCGggGCUgcuCUCGuuCGCGGcGCUCu -3'
miRNA:   3'- cGGUGCuuCGG---GAGCucGUGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 116141 0.7 0.495003
Target:  5'- aGCCGCGcGAGCCCgCGAGCuucaGCaGGCa- -3'
miRNA:   3'- -CGGUGC-UUCGGGaGCUCG----UGcCCGag -5'
29544 3' -59.6 NC_006151.1 + 122350 0.7 0.476324
Target:  5'- gGCCAaGAAccuGCCgCaCGuGCACGGGCUCg -3'
miRNA:   3'- -CGGUgCUU---CGG-GaGCuCGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 113814 0.7 0.477249
Target:  5'- cGCCACGGccucgcgcucgucuCCCUCGAGCACacGCUCg -3'
miRNA:   3'- -CGGUGCUuc------------GGGAGCUCGUGccCGAG- -5'
29544 3' -59.6 NC_006151.1 + 57352 0.7 0.489364
Target:  5'- uCCGCGggGCCCUCGcGCcgccgcagccaguagGCGuGGCa- -3'
miRNA:   3'- cGGUGCuuCGGGAGCuCG---------------UGC-CCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.