miRNA display CGI


Results 81 - 100 of 235 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 129477 0.7 0.523623
Target:  5'- aGCC-CGuccAGGUCCUCGgagggcAGCGCGGGCg- -3'
miRNA:   3'- -CGGuGC---UUCGGGAGC------UCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 60713 0.7 0.514009
Target:  5'- cGCCGCGAccucGGCCC-CGAggugccggaGCACGaGGCa- -3'
miRNA:   3'- -CGGUGCU----UCGGGaGCU---------CGUGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 78399 0.7 0.504467
Target:  5'- gGCCACGGcGGCUCUCGGGcCGCGaGCg- -3'
miRNA:   3'- -CGGUGCU-UCGGGAGCUC-GUGCcCGag -5'
29544 3' -59.6 NC_006151.1 + 106699 0.7 0.485621
Target:  5'- cGCCgGCGAccuguacgcGCCCgUGGGCACGGGCa- -3'
miRNA:   3'- -CGG-UGCUu--------CGGGaGCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 136361 0.7 0.495003
Target:  5'- cCCGCGggGCUgcuCUCGuuCGCGGcGCUCu -3'
miRNA:   3'- cGGUGCuuCGG---GAGCucGUGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 116141 0.7 0.495003
Target:  5'- aGCCGCGcGAGCCCgCGAGCuucaGCaGGCa- -3'
miRNA:   3'- -CGGUGC-UUCGGGaGCUCG----UGcCCGag -5'
29544 3' -59.6 NC_006151.1 + 2190 0.7 0.495003
Target:  5'- cGCC-CGAGGCCCccgCGGGCcggUGGGuCUCc -3'
miRNA:   3'- -CGGuGCUUCGGGa--GCUCGu--GCCC-GAG- -5'
29544 3' -59.6 NC_006151.1 + 139048 0.7 0.494061
Target:  5'- cCCACGcuGaucgcgcucauccUCCUCGAGCuCGGGCUCc -3'
miRNA:   3'- cGGUGCuuC-------------GGGAGCUCGuGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 57352 0.7 0.489364
Target:  5'- uCCGCGggGCCCUCGcGCcgccgcagccaguagGCGuGGCa- -3'
miRNA:   3'- cGGUGCuuCGGGAGCuCG---------------UGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 130839 0.7 0.504467
Target:  5'- cGgCGCGGAGUCgUCGccgucggcGGCGCGGGCg- -3'
miRNA:   3'- -CgGUGCUUCGGgAGC--------UCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 113814 0.7 0.477249
Target:  5'- cGCCACGGccucgcgcucgucuCCCUCGAGCACacGCUCg -3'
miRNA:   3'- -CGGUGCUuc------------GGGAGCUCGUGccCGAG- -5'
29544 3' -59.6 NC_006151.1 + 122350 0.7 0.476324
Target:  5'- gGCCAaGAAccuGCCgCaCGuGCACGGGCUCg -3'
miRNA:   3'- -CGGUgCUU---CGG-GaGCuCGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 83556 0.7 0.523623
Target:  5'- cGUCAucuCGGgcgGGCCCUCGAcCGCGGGCcCg -3'
miRNA:   3'- -CGGU---GCU---UCGGGAGCUcGUGCCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 4217 0.7 0.476324
Target:  5'- gGCgGcCGggGCgCgggCGGGCGCGGGCa- -3'
miRNA:   3'- -CGgU-GCuuCGgGa--GCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 75139 0.7 0.476324
Target:  5'- gGCgGCGcGGCCCagcgCGGgcGCACGGGCaUCa -3'
miRNA:   3'- -CGgUGCuUCGGGa---GCU--CGUGCCCG-AG- -5'
29544 3' -59.6 NC_006151.1 + 73208 0.7 0.476324
Target:  5'- cCCGCGGgccaGGCCCgCGGGCACcugGGGCa- -3'
miRNA:   3'- cGGUGCU----UCGGGaGCUCGUG---CCCGag -5'
29544 3' -59.6 NC_006151.1 + 135718 0.69 0.543051
Target:  5'- uGCuCACGGgcaggAGCCCUCGGGgGCGGuCUa -3'
miRNA:   3'- -CG-GUGCU-----UCGGGAGCUCgUGCCcGAg -5'
29544 3' -59.6 NC_006151.1 + 132574 0.69 0.543051
Target:  5'- uCCACGGccGGgaCUCGcGGCAUGGGCUCc -3'
miRNA:   3'- cGGUGCU--UCggGAGC-UCGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 52376 0.69 0.543051
Target:  5'- cGCCccCGggGCCCgcggGGGCGgCGGGCg- -3'
miRNA:   3'- -CGGu-GCuuCGGGag--CUCGU-GCCCGag -5'
29544 3' -59.6 NC_006151.1 + 76047 0.69 0.543051
Target:  5'- uCCGCGAgccGGCCCUCGuagAGCGugaaGGGCg- -3'
miRNA:   3'- cGGUGCU---UCGGGAGC---UCGUg---CCCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.