Results 61 - 80 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29544 | 3' | -59.6 | NC_006151.1 | + | 59530 | 0.71 | 0.431243 |
Target: 5'- cGCCGCGugagGGCCCa-GcGCGCGGGCa- -3' miRNA: 3'- -CGGUGCu---UCGGGagCuCGUGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 100651 | 0.71 | 0.440061 |
Target: 5'- cGCCGCGccGUCgaCGAGCGCGGcgugcuggcGCUCg -3' miRNA: 3'- -CGGUGCuuCGGgaGCUCGUGCC---------CGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 3113 | 0.71 | 0.446295 |
Target: 5'- cGCCGCGGcgcgGGUCCcaggcCGGGCgcggggcgcccucgGCGGGCUCg -3' miRNA: 3'- -CGGUGCU----UCGGGa----GCUCG--------------UGCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 14987 | 0.71 | 0.448982 |
Target: 5'- cGCUACGucgucGAGCaCCcCGAGUACGGGCc- -3' miRNA: 3'- -CGGUGC-----UUCG-GGaGCUCGUGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 141651 | 0.71 | 0.448982 |
Target: 5'- cGCgGCGggGCCC-----CGCGGGCUCg -3' miRNA: 3'- -CGgUGCuuCGGGagcucGUGCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 116922 | 0.71 | 0.448982 |
Target: 5'- gGCCACGGGccGUCCUCGu-CGCGGGC-Ca -3' miRNA: 3'- -CGGUGCUU--CGGGAGCucGUGCCCGaG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 82407 | 0.71 | 0.458001 |
Target: 5'- cGCC-CGAgggcGGCCC-CGAgagGCGCGGGCg- -3' miRNA: 3'- -CGGuGCU----UCGGGaGCU---CGUGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 88066 | 0.71 | 0.464371 |
Target: 5'- aGCUGCGAgggcaGGCCCUCGAGgCggcagguguagucgACGGGCcCg -3' miRNA: 3'- -CGGUGCU-----UCGGGAGCUC-G--------------UGCCCGaG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 59371 | 0.71 | 0.467116 |
Target: 5'- cGCCGCGcGGCCgUCGucgcguccAGCACGuGGCa- -3' miRNA: 3'- -CGGUGCuUCGGgAGC--------UCGUGC-CCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 125221 | 0.71 | 0.467116 |
Target: 5'- cCCGCGGccGCCCgUCGGGCcCGGcGCUCc -3' miRNA: 3'- cGGUGCUu-CGGG-AGCUCGuGCC-CGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 3683 | 0.71 | 0.467116 |
Target: 5'- gGCgGCG-GGCCC-CGGGCGCGcGGCg- -3' miRNA: 3'- -CGgUGCuUCGGGaGCUCGUGC-CCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 113964 | 0.71 | 0.470788 |
Target: 5'- gGCCGCGcAGCCCUCGgAcgaggugaccaccguGCGCGGcCUCu -3' miRNA: 3'- -CGGUGCuUCGGGAGC-U---------------CGUGCCcGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 122350 | 0.7 | 0.476324 |
Target: 5'- gGCCAaGAAccuGCCgCaCGuGCACGGGCUCg -3' miRNA: 3'- -CGGUgCUU---CGG-GaGCuCGUGCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 75139 | 0.7 | 0.476324 |
Target: 5'- gGCgGCGcGGCCCagcgCGGgcGCACGGGCaUCa -3' miRNA: 3'- -CGgUGCuUCGGGa---GCU--CGUGCCCG-AG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 73208 | 0.7 | 0.476324 |
Target: 5'- cCCGCGGgccaGGCCCgCGGGCACcugGGGCa- -3' miRNA: 3'- cGGUGCU----UCGGGaGCUCGUG---CCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 4217 | 0.7 | 0.476324 |
Target: 5'- gGCgGcCGggGCgCgggCGGGCGCGGGCa- -3' miRNA: 3'- -CGgU-GCuuCGgGa--GCUCGUGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 113814 | 0.7 | 0.477249 |
Target: 5'- cGCCACGGccucgcgcucgucuCCCUCGAGCACacGCUCg -3' miRNA: 3'- -CGGUGCUuc------------GGGAGCUCGUGccCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 106699 | 0.7 | 0.485621 |
Target: 5'- cGCCgGCGAccuguacgcGCCCgUGGGCACGGGCa- -3' miRNA: 3'- -CGG-UGCUu--------CGGGaGCUCGUGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 57352 | 0.7 | 0.489364 |
Target: 5'- uCCGCGggGCCCUCGcGCcgccgcagccaguagGCGuGGCa- -3' miRNA: 3'- cGGUGCuuCGGGAGCuCG---------------UGC-CCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 139048 | 0.7 | 0.494061 |
Target: 5'- cCCACGcuGaucgcgcucauccUCCUCGAGCuCGGGCUCc -3' miRNA: 3'- cGGUGCuuC-------------GGGAGCUCGuGCCCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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